Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0754
         (389 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U40952-5|AAN39680.1|  137|Caenorhabditis elegans Hypothetical pr...    29   1.2  
AY494975-1|AAR87492.1|  486|Caenorhabditis elegans collagen/olfa...    27   6.2  
AF000262-4|AAN60526.2|  486|Caenorhabditis elegans Colmedin (col...    27   6.2  
AF106580-2|AAK71369.1|  439|Caenorhabditis elegans Abnormal embr...    26   8.2  

>U40952-5|AAN39680.1|  137|Caenorhabditis elegans Hypothetical
           protein C03B1.15 protein.
          Length = 137

 Score = 29.1 bits (62), Expect = 1.2
 Identities = 12/35 (34%), Positives = 18/35 (51%)
 Frame = -1

Query: 164 NEYKYKIDTFLSIHTNYNYIPYYIFDSNQFVYFQH 60
           + YKY I  F +   NYN   Y +F+    ++F H
Sbjct: 31  DNYKYVIRRFNAALKNYNKELYLVFEKTDHIHFLH 65


>AY494975-1|AAR87492.1|  486|Caenorhabditis elegans
           collagen/olfactomedin domain containingprotein 2
           protein.
          Length = 486

 Score = 26.6 bits (56), Expect = 6.2
 Identities = 9/38 (23%), Positives = 20/38 (52%)
 Frame = -1

Query: 170 HKNEYKYKIDTFLSIHTNYNYIPYYIFDSNQFVYFQHY 57
           ++N Y   +  +++++ N N I Y  +D   ++Y   Y
Sbjct: 436 YRNTYSQPLIKWINLYKNANMISYNAYDKRIYIYDHGY 473


>AF000262-4|AAN60526.2|  486|Caenorhabditis elegans Colmedin
           (collagen plus olfactomedin)family protein 2 protein.
          Length = 486

 Score = 26.6 bits (56), Expect = 6.2
 Identities = 9/38 (23%), Positives = 20/38 (52%)
 Frame = -1

Query: 170 HKNEYKYKIDTFLSIHTNYNYIPYYIFDSNQFVYFQHY 57
           ++N Y   +  +++++ N N I Y  +D   ++Y   Y
Sbjct: 436 YRNTYSQPLIKWINLYKNANMISYNAYDKRIYIYDHGY 473


>AF106580-2|AAK71369.1|  439|Caenorhabditis elegans Abnormal
           embryonic partitioningof cytoplasm protein 2, isoform a
           protein.
          Length = 439

 Score = 26.2 bits (55), Expect = 8.2
 Identities = 10/31 (32%), Positives = 17/31 (54%)
 Frame = +1

Query: 136 KVSILYLYSFLCFTANQEFTFYPLISSVFWM 228
           ++ I +L   L F    E   +P+ISS+ W+
Sbjct: 205 QLKIKFLRKMLTFLMKTEMARFPIISSISWL 235


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,172,423
Number of Sequences: 27780
Number of extensions: 119236
Number of successful extensions: 291
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 290
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 291
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 587646290
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)