Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0754
         (389 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325089-1|ABD14103.1|  185|Apis mellifera complementary sex det...    23   0.94 
DQ325088-1|ABD14102.1|  185|Apis mellifera complementary sex det...    23   0.94 
DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channe...    21   5.0  
AY569697-1|AAS86650.1|  413|Apis mellifera complementary sex det...    21   6.6  

>DQ325089-1|ABD14103.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 23.4 bits (48), Expect = 0.94
 Identities = 10/25 (40%), Positives = 12/25 (48%)
 Frame = -1

Query: 170 HKNEYKYKIDTFLSIHTNYNYIPYY 96
           H N YKY  +     + NYN   YY
Sbjct: 90  HNNNYKYNYNNNNYNNNNYNKKLYY 114


>DQ325088-1|ABD14102.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 23.4 bits (48), Expect = 0.94
 Identities = 10/25 (40%), Positives = 12/25 (48%)
 Frame = -1

Query: 170 HKNEYKYKIDTFLSIHTNYNYIPYY 96
           H N YKY  +     + NYN   YY
Sbjct: 90  HNNNYKYNYNNNNYNNNNYNKKLYY 114


>DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channel
           protein.
          Length = 489

 Score = 21.0 bits (42), Expect = 5.0
 Identities = 7/11 (63%), Positives = 10/11 (90%)
 Frame = +3

Query: 141 IYLILIFVFMF 173
           IYL++ FVF+F
Sbjct: 306 IYLVMCFVFVF 316


>AY569697-1|AAS86650.1|  413|Apis mellifera complementary sex
           determiner protein.
          Length = 413

 Score = 20.6 bits (41), Expect = 6.6
 Identities = 8/23 (34%), Positives = 11/23 (47%)
 Frame = -1

Query: 164 NEYKYKIDTFLSIHTNYNYIPYY 96
           N Y Y  + +   + NYN   YY
Sbjct: 320 NNYNYNNNNYKYNYNNYNKKLYY 342


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 91,914
Number of Sequences: 438
Number of extensions: 1789
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used:  9514659
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)