Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0744
         (598 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    24   0.98 
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    24   0.98 
L10710-1|AAA27730.1|  382|Apis mellifera hyaluronidase protein.        24   1.3  

>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 24.2 bits (50), Expect = 0.98
 Identities = 12/28 (42%), Positives = 18/28 (64%)
 Frame = -2

Query: 480 INSLSGATITSLFLLLILKNVKSLDGSR 397
           ++ +SGAT  +LFL      ++SLD SR
Sbjct: 358 LSMISGATCYALFLGHATNLIQSLDSSR 385


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 24.2 bits (50), Expect = 0.98
 Identities = 12/28 (42%), Positives = 18/28 (64%)
 Frame = -2

Query: 480 INSLSGATITSLFLLLILKNVKSLDGSR 397
           ++ +SGAT  +LFL      ++SLD SR
Sbjct: 326 LSMISGATCYALFLGHATNLIQSLDSSR 353


>L10710-1|AAA27730.1|  382|Apis mellifera hyaluronidase protein.
          Length = 382

 Score = 23.8 bits (49), Expect = 1.3
 Identities = 9/31 (29%), Positives = 19/31 (61%)
 Frame = +2

Query: 452 VMVAPDKEFILIVVQNPVENLKFTKYYHLFW 544
           +M+AP    +L  VQ+  +N K  + ++++W
Sbjct: 17  LMLAPINALLLGFVQSTPDNNKTVREFNVYW 47


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 149,100
Number of Sequences: 438
Number of extensions: 2669
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17482179
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)