Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0744
         (598 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g64780.1 68414.m07345 ammonium transporter 1, member 2 (AMT1....    28   4.1  
At4g23490.1 68417.m03384 fringe-related protein  + weak similari...    28   5.4  
At3g28610.1 68416.m03571 AAA-type ATPase family protein contains...    28   5.4  
At2g36630.1 68415.m04492 expressed protein  contains Pfam profil...    27   9.5  

>At1g64780.1 68414.m07345 ammonium transporter 1, member 2 (AMT1.2)
           nearly identical to SP|Q9ZPJ8 Ammonium transporter 1,
           member 2 (AtAMT1;2) {Arabidopsis thaliana}
          Length = 514

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 10/17 (58%), Positives = 13/17 (76%)
 Frame = -1

Query: 472 FIGRHHYFAFFASYPQK 422
           FIGRHH F   +SYP++
Sbjct: 117 FIGRHHSFFALSSYPER 133


>At4g23490.1 68417.m03384 fringe-related protein  + weak similarity
           to Fringe [Schistocerca gregaria](GI:6573138);Fringe
           encodes an extracellular protein that regulates Notch
           signalling.
          Length = 526

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 13/28 (46%), Positives = 19/28 (67%)
 Frame = -2

Query: 447 LFLLLILKNVKSLDGSRSRTTVFALSTN 364
           +++L ++   +S D S S TTV ALSTN
Sbjct: 50  IYMLKLVSTSRSCDDSTSFTTVSALSTN 77


>At3g28610.1 68416.m03571 AAA-type ATPase family protein contains
           Pfam profile: ATPase family PF00004
          Length = 473

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 15/36 (41%), Positives = 24/36 (66%)
 Frame = +2

Query: 353 LLTALVDKAKTVVRDLDPSNDLTFLRIRSKKSEVMV 460
           +LTA  +K+  V+ D+D S DLT  R + K+S +M+
Sbjct: 281 ILTATSNKSIIVIEDIDCSLDLTGKR-KKKESNLMI 315


>At2g36630.1 68415.m04492 expressed protein  contains Pfam profile:
           PF01925 domain of unknown function DUF81
          Length = 459

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 14/30 (46%), Positives = 19/30 (63%)
 Frame = +2

Query: 416 LTFLRIRSKKSEVMVAPDKEFILIVVQNPV 505
           LTFL I+  K+E+ V     +IL +VQ PV
Sbjct: 248 LTFLLIQIVKNEIKVCSTIYWILFIVQFPV 277


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,072,803
Number of Sequences: 28952
Number of extensions: 199909
Number of successful extensions: 373
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 371
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 373
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1190791976
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)