Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0742
         (648 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC364.06 |nap1||nucleosome assembly protein Nap1 |Schizosaccha...    34   0.015
SPBC2D10.11c |||nucleosome assembly protein Nap2 |Schizosaccharo...    34   0.020
SPAC13C5.05c |||N-acetylglucosamine-phosphate mutase |Schizosacc...    30   0.25 
SPAC13G6.03 |gpi7||GPI anchor biosynthesis protein Gpi7 |Schizos...    27   2.3  
SPAC20G8.06 |||CCR4-Not complex subunit Not1 |Schizosaccharomyce...    26   5.4  
SPBC11G11.07 ||SPBC18H10.01|karyopherin|Schizosaccharomyces pomb...    25   9.4  

>SPCC364.06 |nap1||nucleosome assembly protein Nap1
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 393

 Score = 34.3 bits (75), Expect = 0.015
 Identities = 17/45 (37%), Positives = 24/45 (53%)
 Frame = +1

Query: 514 NVKGIPDFWYNIFRNVSMLSEMMQELMNQF*NALQDIKVPMHEXP 648
           + KGIP+FW    +NV  LSEM+        + L DI++   E P
Sbjct: 160 DTKGIPEFWLTAMKNVLSLSEMITPEDEGALSHLVDIRISYMEKP 204


>SPBC2D10.11c |||nucleosome assembly protein Nap2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 379

 Score = 33.9 bits (74), Expect = 0.020
 Identities = 15/42 (35%), Positives = 23/42 (54%)
 Frame = +1

Query: 502 SNDPNVKGIPDFWYNIFRNVSMLSEMMQELMNQF*NALQDIK 627
           +N P+ KGIP+FW     NV ++ EM+         +L DI+
Sbjct: 158 NNLPDPKGIPEFWLTCLHNVFLVGEMITPEDENVLRSLSDIR 199


>SPAC13C5.05c |||N-acetylglucosamine-phosphate mutase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 518

 Score = 30.3 bits (65), Expect = 0.25
 Identities = 12/26 (46%), Positives = 21/26 (80%)
 Frame = -2

Query: 578 ISLSIETFLNMLYQKSGIPFTLGSLE 501
           IS ++  +LN+L +KSG+PF+LG ++
Sbjct: 292 ISTALVGYLNILVKKSGMPFSLGVVQ 317


>SPAC13G6.03 |gpi7||GPI anchor biosynthesis protein Gpi7
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 758

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 15/51 (29%), Positives = 30/51 (58%), Gaps = 3/51 (5%)
 Frame = -3

Query: 511 DHWRLDSLVILLFLTLSDGSI---LYRPS*LFFFSVITPWVETFIIIRFIC 368
           D + + ++ ILLF ++  G++   L++P  +   SV T W+ + I + F+C
Sbjct: 663 DSYNIFAVGILLFTSVFAGALWWCLHQPKRMMDRSVKTFWIMSSISLTFLC 713


>SPAC20G8.06 |||CCR4-Not complex subunit Not1 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2100

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = +3

Query: 126  HLLKSGVTRNEMIAAITNRLHAEAMASLP 212
            HLL++  T +E  AA   +LH + + S P
Sbjct: 1596 HLLRNSATNDETKAAFVYQLHKQGILSEP 1624


>SPBC11G11.07 ||SPBC18H10.01|karyopherin|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 955

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 9/32 (28%), Positives = 20/32 (62%)
 Frame = -2

Query: 593 ISSCIISLSIETFLNMLYQKSGIPFTLGSLEA 498
           +SSC++ +S +    +  ++SG+P+    +EA
Sbjct: 420 VSSCLVQISSQLIKVLKIKESGLPYYWQDVEA 451


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,466,421
Number of Sequences: 5004
Number of extensions: 45878
Number of successful extensions: 162
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 159
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 162
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 291768710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)