Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0742
         (648 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g26110.1 68417.m03759 nucleosome assembly protein (NAP), puta...    29   2.7  
At4g18670.1 68417.m02762 leucine-rich repeat family protein / ex...    29   2.7  
At2g19480.1 68415.m02277 nucleosome assembly protein (NAP), puta...    29   3.5  
At5g56950.1 68418.m07109 nucleosome assembly protein (NAP), puta...    28   6.1  
At4g03620.1 68417.m00497 myosin heavy chain-related contains wea...    27   8.1  
At2g26530.1 68415.m03183 expressed protein                             27   8.1  

>At4g26110.1 68417.m03759 nucleosome assembly protein (NAP),
           putative similar to nucleosome assembly protein 1
           [Glycine max] GI:1161252; contains Pfam profile PF00956:
           Nucleosome assembly protein (NAP)
          Length = 372

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 15/43 (34%), Positives = 21/43 (48%)
 Frame = +1

Query: 520 KGIPDFWYNIFRNVSMLSEMMQELMNQF*NALQDIKVPMHEXP 648
           KG+P FW    +N  ++SE + E        L+DIK    E P
Sbjct: 125 KGVPSFWLTALKNNDVISEEVTERDEGALKYLKDIKWCKIEEP 167


>At4g18670.1 68417.m02762 leucine-rich repeat family protein /
           extensin family protein similar to extensin-like protein
           [Lycopersicon esculentum] gi|5917664|gb|AAD55979;
           contains leucine-rich repeats, Pfam:PF00560; contains
           proline rich extensin domains, INTERPRO:IPR002965
          Length = 839

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = -1

Query: 648 GXFMHWHFNILQSILELVHQFLHHFAEH 565
           G  +H H  +L  +  L HQ+LHH   H
Sbjct: 624 GTLLHPHHLLLPQLSHLPHQYLHHRLRH 651


>At2g19480.1 68415.m02277 nucleosome assembly protein (NAP),
           putative similar to nucleosome assembly protein 1
           [Glycine max] GI:1161252; contains Pfam profile PF00956:
           Nucleosome assembly protein (NAP)
          Length = 379

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 15/43 (34%), Positives = 21/43 (48%)
 Frame = +1

Query: 520 KGIPDFWYNIFRNVSMLSEMMQELMNQF*NALQDIKVPMHEXP 648
           KG+PDFW    +N  + +E + E        L+DIK    E P
Sbjct: 124 KGVPDFWLIALKNNEITAEEITERDEGALKYLKDIKWSRVEEP 166


>At5g56950.1 68418.m07109 nucleosome assembly protein (NAP),
           putative similar to nucleosome assembly protein 1
           [Glycine max] GI:1161252; contains Pfam profile PF00956:
           Nucleosome assembly protein (NAP)
          Length = 374

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 15/43 (34%), Positives = 21/43 (48%)
 Frame = +1

Query: 520 KGIPDFWYNIFRNVSMLSEMMQELMNQF*NALQDIKVPMHEXP 648
           KG+P FW    +N  ++SE + E        L+DIK    E P
Sbjct: 124 KGVPSFWLTALKNNDVISEEITERDEGALIYLKDIKWCKIEEP 166


>At4g03620.1 68417.m00497 myosin heavy chain-related contains weak
           similarity to Swiss-Prot:P24733 myosin heavy chain,
           striated muscle [Aequipecten irradians]
          Length = 342

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 14/40 (35%), Positives = 26/40 (65%), Gaps = 1/40 (2%)
 Frame = +2

Query: 371 YEPND-DECLNPWRDDTEEEELARAVQNAAITEGEEKKDD 487
           +E N+ +E ++ +R   + E+L + VQN A+   +EKK+D
Sbjct: 199 HELNEMEELVSDFR--AQNEKLLKKVQNCAVEHNKEKKED 236


>At2g26530.1 68415.m03183 expressed protein
          Length = 317

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 14/44 (31%), Positives = 20/44 (45%)
 Frame = +3

Query: 300 HSNANMKNFTSLFMKSEXXXXXXXXXXXXXNVSTHGVMTLKKKS 431
           H+  ++K FTSLF K E             +VS H    + KK+
Sbjct: 253 HNKDSVKTFTSLFRKQEDTKNSSSRGRGSSSVSAHEFHYMSKKA 296


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,006,265
Number of Sequences: 28952
Number of extensions: 247338
Number of successful extensions: 740
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 715
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 740
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1344285648
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)