Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0740
         (250 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_06_0078 + 10416950-10417174,10417595-10417679,10417782-104179...    25   6.4  

>10_06_0078 +
           10416950-10417174,10417595-10417679,10417782-10417900,
           10418200-10418287,10419400-10419452,10419876-10420015,
           10420094-10420166,10420243-10420311,10420632-10420844,
           10422304-10422498,10422581-10422658,10423456-10423590
          Length = 490

 Score = 25.4 bits (53), Expect = 6.4
 Identities = 9/32 (28%), Positives = 21/32 (65%)
 Frame = -1

Query: 172 WTSHASSSFYALACAYASFAT*LSFLSN*NQE 77
           W +   SS  A++CAY+++A   + +++ ++E
Sbjct: 325 WAASILSSIQAMSCAYSAYAKISAIMTSVSEE 356


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,891,274
Number of Sequences: 37544
Number of extensions: 61743
Number of successful extensions: 83
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 83
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 83
length of database: 14,793,348
effective HSP length: 61
effective length of database: 12,503,164
effective search space used: 262566444
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)