Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0739
         (698 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory recept...    24   1.4  
U09586-2|AAC47271.1|  712|Tribolium castaneum protease, reverse ...    23   2.4  
AF236856-1|AAG17563.2|  370|Tribolium castaneum Kruppel protein ...    21   9.7  

>AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory receptor
           candidate 19 protein.
          Length = 355

 Score = 23.8 bits (49), Expect = 1.4
 Identities = 8/24 (33%), Positives = 15/24 (62%)
 Frame = -1

Query: 473 TFHIWIILC*YFLEFMSVYFIGAF 402
           T H+ +++C Y+  +M + F  AF
Sbjct: 249 TVHLLLLVCIYYFYYMHLLFCCAF 272


>U09586-2|AAC47271.1|  712|Tribolium castaneum protease, reverse
           transcriptase andRNase H protein.
          Length = 712

 Score = 23.0 bits (47), Expect = 2.4
 Identities = 9/13 (69%), Positives = 10/13 (76%)
 Frame = -1

Query: 329 IHILCHYRCHFSL 291
           IH+L  YRC FSL
Sbjct: 274 IHLLQEYRCIFSL 286


>AF236856-1|AAG17563.2|  370|Tribolium castaneum Kruppel protein
           protein.
          Length = 370

 Score = 21.0 bits (42), Expect = 9.7
 Identities = 7/19 (36%), Positives = 10/19 (52%)
 Frame = +2

Query: 548 CPKCEGAFETRYSVFW*QC 604
           C KC G F  R+ +   +C
Sbjct: 249 CDKCRGRFRRRHHLVHHKC 267


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 178,807
Number of Sequences: 336
Number of extensions: 4141
Number of successful extensions: 4
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 18426585
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)