Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0739
         (698 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC16D10.07c |sir2||Sir2 family histone deacetylase Sir2|Schizo...    62   1e-10
SPCC132.02 |hst2||Sir2 family histone deacetylase Hst2|Schizosac...    41   2e-04
SPBC11C11.04c |alp1||tubulin specific chaperone cofactor D |Schi...    31   0.12 
SPAC11E3.02c |||C2 domain protein|Schizosaccharomyces pombe|chr ...    29   0.85 
SPAC6F12.10c |ade3|min11|phosphoribosylformylglycinamidine synth...    29   0.85 
SPAC1783.04c |hst4||Sir2 family histone deacetylase Hst4|Schizos...    29   0.85 
SPBC6B1.09c |nbs1||Mre11 complex subunit Nbs1|Schizosaccharomyce...    27   3.4  
SPBC36.01c |||spermidine family transporter |Schizosaccharomyces...    26   4.5  
SPBC1709.08 |cft1||cleavage factor one Cft1 |Schizosaccharomyces...    26   6.0  
SPCC1682.11c |||DUF580 family protein|Schizosaccharomyces pombe|...    26   6.0  
SPBP8B7.25 |cyp4||cyclophilin family peptidyl-prolyl cis-trans i...    26   6.0  
SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces po...    25   7.9  
SPAC167.01 |ppk4||serine/threonine protein kinase Ppk4 |Schizosa...    25   7.9  

>SPBC16D10.07c |sir2||Sir2 family histone deacetylase
           Sir2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 475

 Score = 61.7 bits (143), Expect = 1e-10
 Identities = 38/125 (30%), Positives = 63/125 (50%), Gaps = 9/125 (7%)
 Frame = +3

Query: 261 THLCIRELEKKGKVTSIVTQNVDXLHHKAG--SEKVIELHGTSYLVQCLKCPYEIDRHEL 434
           +H  IR LEKK K++++ TQN+D L  K G    K+I+ HG+     C+KC +++D  EL
Sbjct: 227 SHAFIRLLEKKNKLSTLFTQNIDNLEKKTGLSDNKIIQCHGSFATATCIKCKHKVDGSEL 286

Query: 435 QEILTENNPDMESSFS----MIRPDGDVDCRGNK*KNSELHSAQ---SVKGPLKPDIVFF 593
            E +        +        +R  G      +   + +  S++   +  G +KPDI FF
Sbjct: 287 YEDIRNQRVSYCNECGKPPLKLRRVGQNKKEKHYFSDGDSESSEDDLAQPGIMKPDITFF 346

Query: 594 GDNVP 608
           G+ +P
Sbjct: 347 GEALP 351


>SPCC132.02 |hst2||Sir2 family histone deacetylase
           Hst2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 332

 Score = 40.7 bits (91), Expect = 2e-04
 Identities = 27/82 (32%), Positives = 40/82 (48%), Gaps = 4/82 (4%)
 Frame = +3

Query: 261 THLCIRELEKKGKVTSIVTQNVDXLHHKAG--SEKVIELHGTSYLVQCLKCPYEIDRHEL 434
           TH  IR L  K  +    TQN+D L   AG   + +IE HG+    +C++C YE+   E 
Sbjct: 99  THYFIRLLHDKRLLQKCYTQNIDTLERLAGVPDKALIEAHGSFQYSRCIEC-YEMAETEY 157

Query: 435 QE--ILTENNPDMESSFSMIRP 494
               I+ +  P   S   +I+P
Sbjct: 158 VRACIMQKQVPKCNSCKGLIKP 179



 Score = 26.6 bits (56), Expect = 3.4
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = +1

Query: 100 GIPDYRSEDVGLYARSNHKPIQYQEFV 180
           GIPD+RS + G+Y       + Y E V
Sbjct: 43  GIPDFRSPETGIYNNLQRFNLPYAEAV 69


>SPBC11C11.04c |alp1||tubulin specific chaperone cofactor D
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1107

 Score = 31.5 bits (68), Expect = 0.12
 Identities = 20/74 (27%), Positives = 36/74 (48%), Gaps = 1/74 (1%)
 Frame = -1

Query: 677 LDPITNTASLLVTSFLTCSHAILGYI-VTKKHYIWFQRPLHTLGRVELGIFLLVPSTINI 501
           L+PI NT ++ +TS L    AIL +  +     I + + LH L  +E+G+   V     +
Sbjct: 365 LNPIENTVNISITSPLVWHGAILFFAKLAGAGLIKYSKCLHILPLIEVGLSYEVRYGTRV 424

Query: 500 AIRSYHGETTFHIW 459
             +S    + + +W
Sbjct: 425 TGQSIRDASCYFVW 438


>SPAC11E3.02c |||C2 domain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1237

 Score = 28.7 bits (61), Expect = 0.85
 Identities = 13/42 (30%), Positives = 22/42 (52%)
 Frame = -3

Query: 231 PTYIISCPVPLPYFRILHKFLILYRFVITTGIQTNILRSVVR 106
           PTY+   P+  PYFR L    + YR  +T  ++   + + +R
Sbjct: 335 PTYVP--PIARPYFRQLLSLCLEYRLQVTDPVEVKQINTFIR 374


>SPAC6F12.10c |ade3|min11|phosphoribosylformylglycinamidine synthase
            Ade3 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1323

 Score = 28.7 bits (61), Expect = 0.85
 Identities = 20/80 (25%), Positives = 37/80 (46%), Gaps = 3/80 (3%)
 Frame = +3

Query: 237  IQLCATNVTHLCIRELEK--KGKVTSIVTQNVDXLHHKAGSEKVIEL-HGTSYLVQCLKC 407
            ++L A N    C+  + K   G+  +I       +  K+   K+  + H TSY +Q ++ 
Sbjct: 959  LELFAANGLSTCVHRIGKVLSGQAQTISFSRSGKIIFKSTRSKLHGIWHETSYKMQEIRD 1018

Query: 408  PYEIDRHELQEILTENNPDM 467
              E  R E++ I   N+P +
Sbjct: 1019 NPECARQEMENIADNNDPGL 1038


>SPAC1783.04c |hst4||Sir2 family histone deacetylase
           Hst4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 415

 Score = 28.7 bits (61), Expect = 0.85
 Identities = 18/63 (28%), Positives = 29/63 (46%), Gaps = 13/63 (20%)
 Frame = +3

Query: 264 HLCIRELEKKGKVTSIVTQNVDXLHHK-------------AGSEKVIELHGTSYLVQCLK 404
           HL + +L ++ K+  + TQN+D L  +             A     I LHGT  +V C +
Sbjct: 135 HLFLSQLAQESKLLRLYTQNIDFLETRLEGLQTCIPLPQSAPWPTTIPLHGTLEVVSCTR 194

Query: 405 CPY 413
           C +
Sbjct: 195 CSF 197


>SPBC6B1.09c |nbs1||Mre11 complex subunit Nbs1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 613

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 15/49 (30%), Positives = 27/49 (55%), Gaps = 5/49 (10%)
 Frame = +3

Query: 351 SEKVIELHGTSYL-----VQCLKCPYEIDRHELQEILTENNPDMESSFS 482
           +EKV+  +G SY      +Q  KCP+ I+ +     +  +NP+M S ++
Sbjct: 82  NEKVVGQNGDSYKEKDLKIQLGKCPFTINAYWRSMCIQFDNPEMLSQWA 130


>SPBC36.01c |||spermidine family transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 580

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 11/35 (31%), Positives = 19/35 (54%)
 Frame = -2

Query: 217 FLPSTFALLSDTSQILDTV*VCDYYGHTDQHPPIC 113
           FL S F +   T+Q + T+ +C ++G      P+C
Sbjct: 212 FLFSVFQIAVATAQDIQTIMICRFFGGYGACVPLC 246


>SPBC1709.08 |cft1||cleavage factor one Cft1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1441

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 16/46 (34%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
 Frame = -2

Query: 607 GTLSPKNTISGFKGPFTLWAEWSSEFFYL-FPRQSTSPSGLIMEKL 473
           GT++   T S  + PF +    S +FFYL F     S  GL ++ L
Sbjct: 353 GTIAIPLTSSKTETPFVVLVHTSGQFFYLDFLLDGKSVKGLSLQAL 398


>SPCC1682.11c |||DUF580 family protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 574

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 12/40 (30%), Positives = 19/40 (47%)
 Frame = -3

Query: 645 SHFFSDLFPRDIGVHCHQKTLYLVSKAPSHFGQSGARNFS 526
           SHFF  +     G+      L +++K P HF  +  R+ S
Sbjct: 385 SHFFYHVVSNQYGLCAFSSFLVVITKVPLHFLPTWLRHVS 424


>SPBP8B7.25 |cyp4||cyclophilin family peptidyl-prolyl cis-trans
           isomerase Cyp4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 201

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 20/49 (40%), Positives = 23/49 (46%), Gaps = 1/49 (2%)
 Frame = -1

Query: 653 SLLVTSFLTCSHAILGYIVTKKHYIWFQRPLHTLGRVELGIF-LLVPST 510
           SLL T F     A  G  VT   Y   Q+    LGRV +G+F   VP T
Sbjct: 7   SLLFTLFFGLISANRGPKVTDTVYFDLQQGDEFLGRVTIGLFGKTVPKT 55


>SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 2812

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 12/30 (40%), Positives = 19/30 (63%)
 Frame = -3

Query: 303  SLFPSSLVLEYRDV*RWLHTTESRPTYIIS 214
            S+FPS   + Y  +  WL+TT+S  T ++S
Sbjct: 2116 SIFPS---ISYAYLGNWLYTTKSEKTELVS 2142


>SPAC167.01 |ppk4||serine/threonine protein kinase Ppk4
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1072

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 20/86 (23%), Positives = 43/86 (50%)
 Frame = +3

Query: 90  VVVRYS*LQIGGCWSVCP**SQTYTVSRICEVSESKAKVLGKKLYRLAEIQLCATNVTHL 269
           +V  +S L+I     V P  SQ  TVS   ++  SK +  GK+  R+++    ++N   +
Sbjct: 535 IVTFFSILRIRSS-EVRPLKSQKNTVSINNKIDTSKRRRKGKRRKRVSDEHSASSNFNEI 593

Query: 270 CIRELEKKGKVTSIVTQNVDXLHHKA 347
             +   ++ +   I+++N+  +  K+
Sbjct: 594 ESQASFEQNQTLDILSENIVEIQDKS 619


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,090,991
Number of Sequences: 5004
Number of extensions: 69634
Number of successful extensions: 187
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 172
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 186
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 323158234
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)