Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= tesS0739
(698 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_01_0509 - 4029739-4029890,4031064-4031208,4031665-4031709,403... 97 2e-20
04_03_0112 - 11369013-11369193,11369194-11369354,11370281-113703... 54 1e-07
09_06_0246 + 21837144-21838194,21838692-21840038,21840576-218406... 29 4.7
05_03_0251 + 10987441-10988961,10989731-10989823,10989937-10990053 29 4.7
06_03_0191 - 17720512-17721435,17721718-17721843,17721940-177221... 28 6.2
08_02_0293 - 15424397-15428041 28 8.2
>12_01_0509 -
4029739-4029890,4031064-4031208,4031665-4031709,
4031800-4031899,4032013-4032140,4032548-4032712,
4033033-4033162,4033252-4033412,4034306-4034351,
4034429-4034494,4034579-4034664,4035811-4035849
Length = 420
Score = 96.7 bits (230), Expect = 2e-20
Identities = 58/143 (40%), Positives = 79/143 (55%), Gaps = 16/143 (11%)
Frame = +3
Query: 255 NVTHLCIRELEKKGKVTSIVTQNVDXLHHKAGSEKVIELHGTSYLVQCLKCPYEIDRHEL 434
N H + LE+ G+V S+VTQNVD LHH+AGS K +ELHG+ Y V CL C IDR
Sbjct: 108 NSAHYALASLERIGRVHSMVTQNVDRLHHRAGS-KPVELHGSVYEVACLDCGTSIDRESF 166
Query: 435 QEILTENNPDM--------------ESSFSMI-RPDGDVDCRGNK*KNS-ELHSAQSVKG 566
QE + + NP + SF M RPDGD++ + ++ S G
Sbjct: 167 QEQVKDLNPKWALAIDSLEVGQPGSDKSFGMQQRPDGDIEIDEKFWEQDFDIPSCNQCGG 226
Query: 567 PLKPDIVFFGDNVPQYRVGTSQK 635
LKPD+V FGDNVP+ R ++++
Sbjct: 227 VLKPDVVMFGDNVPEERAESTKE 249
Score = 64.5 bits (150), Expect = 8e-11
Identities = 30/54 (55%), Positives = 38/54 (70%)
Frame = +1
Query: 100 GIPDYRSEDVGLYARSNHKPIQYQEFVKYPKVRQRYWARNYIGWPRFSCVQPTS 261
GIPDYRS + G Y+ S KP+ +QEFV+ + R+RYWAR+Y GW RF QP S
Sbjct: 58 GIPDYRSPN-GAYS-SGFKPLTHQEFVRSIRARRRYWARSYAGWRRFRRAQPNS 109
>04_03_0112 -
11369013-11369193,11369194-11369354,11370281-11370383,
11370467-11370534,11372340-11372393,11374173-11374251,
11376054-11376133,11376584-11376692,11376813-11376913,
11378407-11378526,11379613-11379642,11380591-11380689
Length = 394
Score = 54.0 bits (124), Expect = 1e-07
Identities = 28/71 (39%), Positives = 44/71 (61%), Gaps = 3/71 (4%)
Frame = +3
Query: 258 VTHLCIRELEKKGKVTSIVTQNVDXLHHKAG--SEKVIELHGTSYLVQCLKCPYEIDR-H 428
+TH+ + ELEK G++ +++QNVD LH ++G EK+ ELHG S+ C C E R
Sbjct: 63 LTHMALVELEKTGRLKFVISQNVDSLHLRSGLPREKLAELHGNSFKEICPSCKKEYLRDF 122
Query: 429 ELQEILTENNP 461
E++ I ++ P
Sbjct: 123 EIETIGLKDTP 133
>09_06_0246 +
21837144-21838194,21838692-21840038,21840576-21840656,
21842740-21842924
Length = 887
Score = 28.7 bits (61), Expect = 4.7
Identities = 15/64 (23%), Positives = 30/64 (46%)
Frame = +3
Query: 159 YTVSRICEVSESKAKVLGKKLYRLAEIQLCATNVTHLCIRELEKKGKVTSIVTQNVDXLH 338
YT S I + + A VL +++ + + L +THL + + KG + + ++ H
Sbjct: 785 YTHSTISQYFTTAAAVLARQVEAVISVNLAKLFITHLIMEAVGVKGSLKRPLKFHIQYPH 844
Query: 339 HKAG 350
+ G
Sbjct: 845 KRLG 848
>05_03_0251 + 10987441-10988961,10989731-10989823,10989937-10990053
Length = 576
Score = 28.7 bits (61), Expect = 4.7
Identities = 11/31 (35%), Positives = 21/31 (67%)
Frame = +3
Query: 423 RHELQEILTENNPDMESSFSMIRPDGDVDCR 515
R E++E+L N+ D ++ SM+ DG ++C+
Sbjct: 140 RFEIEEVLHVNSDDSQNLPSMVSSDGCLNCK 170
>06_03_0191 - 17720512-17721435,17721718-17721843,17721940-17722140,
17722189-17722332,17722415-17722722,17723433-17723568,
17723748-17723841,17723976-17724073,17724951-17725004,
17725704-17726150,17726227-17726393,17726540-17726663,
17726751-17726837,17727000-17727056,17727492-17727560,
17727664-17727811,17727893-17728116,17728842-17728958,
17729649-17729742,17730573-17730640,17733278-17733334,
17733412-17733511,17733638-17733674,17734077-17734200,
17735254-17735322,17735371-17735410,17735905-17735993,
17736849-17736953,17737033-17737104,17737814-17737936,
17738049-17738117,17738966-17739059,17739145-17739231,
17740184-17740351,17740436-17740552,17741484-17741590,
17741671-17741803,17742564-17742667,17743504-17743629,
17744148-17744216,17744996-17745064,17745278-17745358,
17745444-17745533,17745896-17746000,17747803-17747873,
17748320-17748461,17749266-17749330,17750081-17750168,
17750236-17750325,17750437-17750673,17751064-17751170,
17751625-17751832,17752376-17752546
Length = 2366
Score = 28.3 bits (60), Expect = 6.2
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = +1
Query: 91 WSLGIPDYRSEDVGLYARSNHKP 159
W + DY S GL++R NHKP
Sbjct: 1504 WIGALKDYSSISFGLHSRINHKP 1526
>08_02_0293 - 15424397-15428041
Length = 1214
Score = 27.9 bits (59), Expect = 8.2
Identities = 18/65 (27%), Positives = 32/65 (49%), Gaps = 3/65 (4%)
Frame = -2
Query: 370 NSITFSEPALWCXXSTFCVTIDVTFPFFSSS---RIQRCVTLVAHN*ISANLYNFLPSTF 200
N+++ P +C ST T+ +++ F+ + I RCV L+ + NL +PS F
Sbjct: 511 NNLSGEIPDKFCFNSTALETLVISYNSFTGNIPESITRCVNLIWLSLAGNNLTGSIPSGF 570
Query: 199 ALLSD 185
L +
Sbjct: 571 GNLQN 575
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,037,820
Number of Sequences: 37544
Number of extensions: 409104
Number of successful extensions: 930
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 899
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 929
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1792053856
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -