Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0730
         (299 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_52116| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   1.2  
SB_46645| Best HMM Match : Exo_endo_phos (HMM E-Value=0.044)           27   2.8  
SB_28221| Best HMM Match : eRF1_3 (HMM E-Value=8.7)                    25   8.6  

>SB_52116| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1084

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 12/36 (33%), Positives = 18/36 (50%)
 Frame = -3

Query: 288 LHLFFIYTKXHFALNTDGCXRRHPRRYVSEFNISSC 181
           L L FIY    F ++   C  +HP +  +E  + SC
Sbjct: 831 LELKFIYRHLKFKVHQFSCNEKHPVKQCNESLVKSC 866


>SB_46645| Best HMM Match : Exo_endo_phos (HMM E-Value=0.044)
          Length = 464

 Score = 27.1 bits (57), Expect = 2.8
 Identities = 14/28 (50%), Positives = 16/28 (57%), Gaps = 3/28 (10%)
 Frame = -3

Query: 258 HFALNTDGCXRRHPRRYVS---EFNISS 184
           HF  NTD   RRHP   +S   +FN SS
Sbjct: 312 HFQENTDAFLRRHPEGLISICGDFNPSS 339


>SB_28221| Best HMM Match : eRF1_3 (HMM E-Value=8.7)
          Length = 348

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 15/36 (41%), Positives = 20/36 (55%), Gaps = 3/36 (8%)
 Frame = -3

Query: 138 MGRSKNRRVLHTYSYR---DRSKG*YLKVSKFSLQR 40
           MG+ KNR V    SYR    +SK   +KV K ++ R
Sbjct: 1   MGKGKNRSVYRHSSYRTLPTKSKSLRMKVGKSNIPR 36


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,366,641
Number of Sequences: 59808
Number of extensions: 56566
Number of successful extensions: 120
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 96
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 120
length of database: 16,821,457
effective HSP length: 71
effective length of database: 12,575,089
effective search space used: 352102492
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)