Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0730
         (299 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g69910.1 68414.m08045 protein kinase family protein contains ...    29   0.76 
At1g66450.1 68414.m07549 DC1 domain-containing protein contains ...    26   4.1  
At1g28440.1 68414.m03496 leucine-rich repeat transmembrane prote...    26   4.1  

>At1g69910.1 68414.m08045 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069
          Length = 636

 Score = 28.7 bits (61), Expect = 0.76
 Identities = 13/40 (32%), Positives = 17/40 (42%)
 Frame = -3

Query: 279 FFIYTKXHFALNTDGCXRRHPRRYVSEFNISSCSTCKW*C 160
           F   T   F ++   C R    R  S F + +CS C W C
Sbjct: 115 FIDLTGSPFRVSDSSCSRLSLLRPCSPFTLPNCSRCPWDC 154


>At1g66450.1 68414.m07549 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 700

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 11/28 (39%), Positives = 13/28 (46%)
 Frame = -3

Query: 189 SSCSTCKW*CTESRXRSMGRSKNRRVLH 106
           +SCS C W CT        R   R +LH
Sbjct: 482 NSCSACPWLCTTGFFYECDREGCRFILH 509


>At1g28440.1 68414.m03496 leucine-rich repeat transmembrane protein
           kinase, putative similar to receptor kinase GI:4105699
           from [Arabidopsis thaliana]
          Length = 996

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 15/50 (30%), Positives = 24/50 (48%), Gaps = 7/50 (14%)
 Frame = -3

Query: 294 FFLHLFFIYTKXHFALNTDGCXRRH-------PRRYVSEFNISSCSTCKW 166
           + L LF ++    F+LN DG   +        P  Y+S +N +  S C+W
Sbjct: 2   YLLFLFLLFPTV-FSLNQDGFILQQVKLSLDDPDSYLSSWNSNDASPCRW 50


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,692,599
Number of Sequences: 28952
Number of extensions: 40082
Number of successful extensions: 68
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 66
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 68
length of database: 12,070,560
effective HSP length: 70
effective length of database: 10,043,920
effective search space used: 291273680
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)