Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0728
         (628 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase ...    23   2.1  
AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase ...    23   2.1  
AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase ...    23   2.1  
AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase ...    23   2.1  
AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase ...    23   2.1  
AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase ...    23   2.1  
AF322227-1|AAK01654.1|  782|Tribolium castaneum cell surface pro...    22   4.8  
AJ223614-1|CAA11490.1|  301|Tribolium castaneum orthodenticle-2 ...    21   6.4  
AY884062-1|AAX84203.1|  712|Tribolium castaneum laccase 2B protein.    21   8.4  
AY884061-1|AAX84202.1|  717|Tribolium castaneum laccase 2A protein.    21   8.4  

>AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase
           variant 2 protein.
          Length = 1558

 Score = 23.0 bits (47), Expect = 2.1
 Identities = 7/20 (35%), Positives = 10/20 (50%)
 Frame = +1

Query: 106 FLDNFPKVEMVRWRYCFVLA 165
           F+   P  E V W +C + A
Sbjct: 119 FIVKLPSAERVAWMWCLIFA 138


>AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase
           variant 1 protein.
          Length = 1558

 Score = 23.0 bits (47), Expect = 2.1
 Identities = 7/20 (35%), Positives = 10/20 (50%)
 Frame = +1

Query: 106 FLDNFPKVEMVRWRYCFVLA 165
           F+   P  E V W +C + A
Sbjct: 119 FIVKLPSAERVAWMWCLIFA 138


>AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase
           protein.
          Length = 1464

 Score = 23.0 bits (47), Expect = 2.1
 Identities = 8/23 (34%), Positives = 15/23 (65%)
 Frame = +1

Query: 106 FLDNFPKVEMVRWRYCFVLAVLL 174
           F+ + P+VE V+W +  + A L+
Sbjct: 109 FVVSLPEVERVQWIWLLIFAYLI 131


>AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase
           CHS2 protein.
          Length = 1464

 Score = 23.0 bits (47), Expect = 2.1
 Identities = 8/23 (34%), Positives = 15/23 (65%)
 Frame = +1

Query: 106 FLDNFPKVEMVRWRYCFVLAVLL 174
           F+ + P+VE V+W +  + A L+
Sbjct: 109 FVVSLPEVERVQWIWLLIFAYLI 131


>AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase
           CHS1B protein.
          Length = 1558

 Score = 23.0 bits (47), Expect = 2.1
 Identities = 7/20 (35%), Positives = 10/20 (50%)
 Frame = +1

Query: 106 FLDNFPKVEMVRWRYCFVLA 165
           F+   P  E V W +C + A
Sbjct: 119 FIVKLPSAERVAWMWCLIFA 138


>AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase
           CHS1A protein.
          Length = 1558

 Score = 23.0 bits (47), Expect = 2.1
 Identities = 7/20 (35%), Positives = 10/20 (50%)
 Frame = +1

Query: 106 FLDNFPKVEMVRWRYCFVLA 165
           F+   P  E V W +C + A
Sbjct: 119 FIVKLPSAERVAWMWCLIFA 138


>AF322227-1|AAK01654.1|  782|Tribolium castaneum cell surface
           protein chaoptin protein.
          Length = 782

 Score = 21.8 bits (44), Expect = 4.8
 Identities = 10/25 (40%), Positives = 14/25 (56%), Gaps = 1/25 (4%)
 Frame = -2

Query: 144 PPNHFHFREIIKKISIL-NTKMPLH 73
           P N FHF   +KK+ +  NT   +H
Sbjct: 58  PDNSFHFLRSLKKVHLQDNTIEMIH 82


>AJ223614-1|CAA11490.1|  301|Tribolium castaneum orthodenticle-2
           protein protein.
          Length = 301

 Score = 21.4 bits (43), Expect = 6.4
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = -2

Query: 195 ASSHRQQKQHGQNKTV 148
           A   +QQKQH Q ++V
Sbjct: 122 AKCRQQQKQHNQQQSV 137


>AY884062-1|AAX84203.1|  712|Tribolium castaneum laccase 2B protein.
          Length = 712

 Score = 21.0 bits (42), Expect = 8.4
 Identities = 4/8 (50%), Positives = 8/8 (100%)
 Frame = -3

Query: 83  CHYIFHVI 60
           CH++FH++
Sbjct: 671 CHFLFHIV 678


>AY884061-1|AAX84202.1|  717|Tribolium castaneum laccase 2A protein.
          Length = 717

 Score = 21.0 bits (42), Expect = 8.4
 Identities = 4/8 (50%), Positives = 8/8 (100%)
 Frame = -3

Query: 83  CHYIFHVI 60
           CH++FH++
Sbjct: 671 CHFLFHIV 678


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 115,779
Number of Sequences: 336
Number of extensions: 1909
Number of successful extensions: 11
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 16083914
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)