Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0728
         (628 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC63.10c |||dolichol kinase |Schizosaccharomyces pombe|chr 3||...    30   0.24 
SPAC20G8.05c |cdc15||cell division control protein Cdc15|Schizos...    25   6.8  
SPBC23E6.05 |arx1||ribosomal export complex Arx1 |Schizosaccharo...    25   9.0  

>SPCC63.10c |||dolichol kinase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 465

 Score = 30.3 bits (65), Expect = 0.24
 Identities = 12/41 (29%), Positives = 21/41 (51%)
 Frame = +2

Query: 65  HEKCNGIFVFNIDIFLIISLKWKWFGGGTVLFWPCCFCCRC 187
           ++   G+F F+I +FL++ L   +    +V FW   F   C
Sbjct: 397 NKSIEGVFAFSISVFLVLHLTQAFHVCPSVTFWKTLFMSLC 437


>SPAC20G8.05c |cdc15||cell division control protein
           Cdc15|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 927

 Score = 25.4 bits (53), Expect = 6.8
 Identities = 11/32 (34%), Positives = 19/32 (59%)
 Frame = -3

Query: 200 LEPVRIGSRSNTARTKQYLHRTISTLGKLSRK 105
           L+P   GSRS+     ++ H + ++LG + RK
Sbjct: 469 LQPTATGSRSSRLSFSRHGHGSQTSLGSIKRK 500


>SPBC23E6.05 |arx1||ribosomal export complex Arx1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 417

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 10/27 (37%), Positives = 14/27 (51%)
 Frame = -2

Query: 618 KAWLLQRFSSQHVVSGEPTHPDLXPRI 538
           +AWL+    S   +S    HPDL P +
Sbjct: 263 EAWLIDISMSSQPISSLKEHPDLKPTL 289


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,966,454
Number of Sequences: 5004
Number of extensions: 29866
Number of successful extensions: 71
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 71
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 71
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 277683324
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)