Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0728
         (628 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_0451 - 3404749-3405171,3405444-3405599,3405711-3406583,340...    31   0.75 
07_03_1003 + 23239829-23240121,23240257-23240349,23240785-232409...    30   1.7  
02_01_0369 + 2649178-2655291,2655773-2656601,2656737-2657425,265...    28   7.0  

>07_01_0451 -
           3404749-3405171,3405444-3405599,3405711-3406583,
           3406847-3406942
          Length = 515

 Score = 31.1 bits (67), Expect = 0.75
 Identities = 10/23 (43%), Positives = 17/23 (73%)
 Frame = -2

Query: 183 RQQKQHGQNKTVPPPNHFHFREI 115
           R +K HG+ +T+PP  H+H +E+
Sbjct: 385 RYRKAHGKLRTLPPCPHYHLKEV 407


>07_03_1003 +
           23239829-23240121,23240257-23240349,23240785-23240993,
           23241585-23241729,23241809-23241881,23242165-23242311,
           23242411-23242536,23242653-23242712
          Length = 381

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = +2

Query: 68  EKCNGIFVFNIDIFLIISLKWKWFG 142
           +KC GIF+ NI + ++   K  WFG
Sbjct: 211 QKCKGIFLLNISLRMLHISKQPWFG 235


>02_01_0369 + 2649178-2655291,2655773-2656601,2656737-2657425,
            2657523-2657649,2657731-2657812,2658172-2658196
          Length = 2621

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 9/17 (52%), Positives = 15/17 (88%)
 Frame = -2

Query: 141  PNHFHFREIIKKISILN 91
            P +FHFR+I++KI +L+
Sbjct: 1380 PENFHFRDIVEKIELLS 1396


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,280,769
Number of Sequences: 37544
Number of extensions: 202018
Number of successful extensions: 568
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 557
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 567
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1525730988
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)