Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= tesS0728
(628 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF039041-1|AAP46271.1| 1067|Caenorhabditis elegans Laminin relat... 31 0.67
AF016668-7|AAB66091.3| 471|Caenorhabditis elegans Hypothetical ... 30 1.2
Z37983-7|CAA86058.1| 1106|Caenorhabditis elegans Hypothetical pr... 28 6.3
AJ243182-1|CAB45863.1| 2857|Caenorhabditis elegans inositol 1,4,... 27 8.3
AJ243181-1|CAB45862.1| 2836|Caenorhabditis elegans inositol 1,4,... 27 8.3
AJ243180-1|CAB45861.1| 2892|Caenorhabditis elegans inositol 1,4,... 27 8.3
AJ243179-1|CAB45860.1| 2846|Caenorhabditis elegans inositol 1,4,... 27 8.3
AF168688-1|AAF05302.1| 2846|Caenorhabditis elegans inositol 1,4,... 27 8.3
AF036702-5|AAM98028.1| 1713|Caenorhabditis elegans Inositol trip... 27 8.3
AF036702-4|AAK68365.1| 2857|Caenorhabditis elegans Inositol trip... 27 8.3
AF036702-3|AAK68366.1| 2846|Caenorhabditis elegans Inositol trip... 27 8.3
AF036702-2|AAW30669.1| 2836|Caenorhabditis elegans Inositol trip... 27 8.3
AF036702-1|AAW30668.1| 2892|Caenorhabditis elegans Inositol trip... 27 8.3
>AF039041-1|AAP46271.1| 1067|Caenorhabditis elegans Laminin related.
see also lmb-protein 1 protein.
Length = 1067
Score = 31.1 bits (67), Expect = 0.67
Identities = 12/31 (38%), Positives = 17/31 (54%)
Frame = +2
Query: 500 CYVRGSDNNYEAVIRGCKSGCVGSPDTTCCE 592
CY+R S NN + ++ CKSG G C +
Sbjct: 958 CYLRNSGNNTQDIVCNCKSGYQGERCGECAQ 988
>AF016668-7|AAB66091.3| 471|Caenorhabditis elegans Hypothetical
protein F36H9.1 protein.
Length = 471
Score = 30.3 bits (65), Expect = 1.2
Identities = 14/44 (31%), Positives = 21/44 (47%)
Frame = +2
Query: 494 HVCYVRGSDNNYEAVIRGCKSGCVGSPDTTCCELNRCNNQAFAM 625
H+CYV DN + RGC S G+P+ C C + + +
Sbjct: 6 HLCYVHKDDNT---ISRGCLSVSDGAPEDDNCVNGFCETENYCI 46
>Z37983-7|CAA86058.1| 1106|Caenorhabditis elegans Hypothetical
protein B0393.5 protein.
Length = 1106
Score = 27.9 bits (59), Expect = 6.3
Identities = 9/21 (42%), Positives = 12/21 (57%)
Frame = +2
Query: 548 CKSGCVGSPDTTCCELNRCNN 610
CK G G P + C ++N C N
Sbjct: 474 CKDGYEGDPSSECRDVNECKN 494
>AJ243182-1|CAB45863.1| 2857|Caenorhabditis elegans inositol
1,4,5-trisphosphate receptorprotein.
Length = 2857
Score = 27.5 bits (58), Expect = 8.3
Identities = 10/21 (47%), Positives = 14/21 (66%)
Frame = -3
Query: 80 HYIFHVITETLILFLSSKFSS 18
HYI H +TE LI F + +S+
Sbjct: 1580 HYICHTVTEVLIKFFEAPYSA 1600
>AJ243181-1|CAB45862.1| 2836|Caenorhabditis elegans inositol
1,4,5-trisphosphate receptorprotein.
Length = 2836
Score = 27.5 bits (58), Expect = 8.3
Identities = 10/21 (47%), Positives = 14/21 (66%)
Frame = -3
Query: 80 HYIFHVITETLILFLSSKFSS 18
HYI H +TE LI F + +S+
Sbjct: 1561 HYICHTVTEVLIKFFEAPYSA 1581
>AJ243180-1|CAB45861.1| 2892|Caenorhabditis elegans inositol
1,4,5-trisphosphate receptorprotein.
Length = 2892
Score = 27.5 bits (58), Expect = 8.3
Identities = 10/21 (47%), Positives = 14/21 (66%)
Frame = -3
Query: 80 HYIFHVITETLILFLSSKFSS 18
HYI H +TE LI F + +S+
Sbjct: 1617 HYICHTVTEVLIKFFEAPYSA 1637
>AJ243179-1|CAB45860.1| 2846|Caenorhabditis elegans inositol
1,4,5-trisphosphate receptorprotein.
Length = 2846
Score = 27.5 bits (58), Expect = 8.3
Identities = 10/21 (47%), Positives = 14/21 (66%)
Frame = -3
Query: 80 HYIFHVITETLILFLSSKFSS 18
HYI H +TE LI F + +S+
Sbjct: 1571 HYICHTVTEVLIKFFEAPYSA 1591
>AF168688-1|AAF05302.1| 2846|Caenorhabditis elegans inositol
1,4,5-trisphosphate receptorprotein.
Length = 2846
Score = 27.5 bits (58), Expect = 8.3
Identities = 10/21 (47%), Positives = 14/21 (66%)
Frame = -3
Query: 80 HYIFHVITETLILFLSSKFSS 18
HYI H +TE LI F + +S+
Sbjct: 1571 HYICHTVTEVLIKFFEAPYSA 1591
>AF036702-5|AAM98028.1| 1713|Caenorhabditis elegans Inositol
triphosphate receptorprotein 1, isoform g protein.
Length = 1713
Score = 27.5 bits (58), Expect = 8.3
Identities = 10/21 (47%), Positives = 14/21 (66%)
Frame = -3
Query: 80 HYIFHVITETLILFLSSKFSS 18
HYI H +TE LI F + +S+
Sbjct: 1571 HYICHTVTEVLIKFFEAPYSA 1591
>AF036702-4|AAK68365.1| 2857|Caenorhabditis elegans Inositol
triphosphate receptorprotein 1, isoform e protein.
Length = 2857
Score = 27.5 bits (58), Expect = 8.3
Identities = 10/21 (47%), Positives = 14/21 (66%)
Frame = -3
Query: 80 HYIFHVITETLILFLSSKFSS 18
HYI H +TE LI F + +S+
Sbjct: 1580 HYICHTVTEVLIKFFEAPYSA 1600
>AF036702-3|AAK68366.1| 2846|Caenorhabditis elegans Inositol
triphosphate receptorprotein 1, isoform f protein.
Length = 2846
Score = 27.5 bits (58), Expect = 8.3
Identities = 10/21 (47%), Positives = 14/21 (66%)
Frame = -3
Query: 80 HYIFHVITETLILFLSSKFSS 18
HYI H +TE LI F + +S+
Sbjct: 1571 HYICHTVTEVLIKFFEAPYSA 1591
>AF036702-2|AAW30669.1| 2836|Caenorhabditis elegans Inositol
triphosphate receptorprotein 1, isoform d protein.
Length = 2836
Score = 27.5 bits (58), Expect = 8.3
Identities = 10/21 (47%), Positives = 14/21 (66%)
Frame = -3
Query: 80 HYIFHVITETLILFLSSKFSS 18
HYI H +TE LI F + +S+
Sbjct: 1561 HYICHTVTEVLIKFFEAPYSA 1581
>AF036702-1|AAW30668.1| 2892|Caenorhabditis elegans Inositol
triphosphate receptorprotein 1, isoform a protein.
Length = 2892
Score = 27.5 bits (58), Expect = 8.3
Identities = 10/21 (47%), Positives = 14/21 (66%)
Frame = -3
Query: 80 HYIFHVITETLILFLSSKFSS 18
HYI H +TE LI F + +S+
Sbjct: 1617 HYICHTVTEVLIKFFEAPYSA 1637
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,297,351
Number of Sequences: 27780
Number of extensions: 180778
Number of successful extensions: 586
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 563
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 585
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1374536540
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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