Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0728
         (628 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                29   0.049
U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodops...    24   1.4  
AF091732-1|AAD02869.2|  154|Apis mellifera long-wavelength rhodo...    24   1.4  

>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 28.7 bits (61), Expect = 0.049
 Identities = 10/27 (37%), Positives = 14/27 (51%)
 Frame = -2

Query: 198 GASSHRQQKQHGQNKTVPPPNHFHFRE 118
           G+S H Q   H    T+ PP+H H  +
Sbjct: 331 GSSPHHQHGNHTMGPTMGPPHHHHHHQ 357


>U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodopsin
           protein.
          Length = 377

 Score = 23.8 bits (49), Expect = 1.4
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = +2

Query: 74  CNGIFVFNIDIFLIISLKW 130
           C GI+V+ + +FLII   W
Sbjct: 219 CYGIWVYFVPLFLIIYSYW 237


>AF091732-1|AAD02869.2|  154|Apis mellifera long-wavelength
           rhodopsin protein.
          Length = 154

 Score = 23.8 bits (49), Expect = 1.4
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = +2

Query: 74  CNGIFVFNIDIFLIISLKW 130
           C GI+V+ + +FLII   W
Sbjct: 95  CYGIWVYFVPLFLIIYSYW 113


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 136,580
Number of Sequences: 438
Number of extensions: 2380
Number of successful extensions: 4
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18704709
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)