Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0727
         (548 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    24   0.88 
DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated...    22   3.6  
AY217747-1|AAP45005.1|  246|Apis mellifera short-chain dehydroge...    22   4.7  
DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    21   6.2  
DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholi...    21   8.2  
DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholi...    21   8.2  

>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 24.2 bits (50), Expect = 0.88
 Identities = 12/31 (38%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
 Frame = +2

Query: 284 QENISLQYFYHDL-FXI*FVYGIKLIIICTV 373
           ++N+ +   Y D  + I F Y I LI++CTV
Sbjct: 802 EDNLLVCNSYVDASYMIAFAYPIMLIVVCTV 832


>DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 391

 Score = 22.2 bits (45), Expect = 3.6
 Identities = 8/24 (33%), Positives = 13/24 (54%)
 Frame = -1

Query: 170 HLHQVKLHKRDNKHTFQRVWRDAQ 99
           ++ +VK  K  +KH  Q  W D +
Sbjct: 325 YIPKVKNKKAGSKHLLQNTWLDPE 348


>AY217747-1|AAP45005.1|  246|Apis mellifera short-chain
           dehydrogenase/reductase protein.
          Length = 246

 Score = 21.8 bits (44), Expect = 4.7
 Identities = 14/44 (31%), Positives = 17/44 (38%)
 Frame = +2

Query: 89  PKNTEHRARHAGKCACCPACVTLLGEGATCKIYSKELGETPSAV 220
           P N    A  A KCA       L  E A C+   K +  +P  V
Sbjct: 153 PMNRNRPAYLASKCALTTLTDCLRSELAQCESNIKVISISPDLV 196


>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 21.4 bits (43), Expect = 6.2
 Identities = 8/23 (34%), Positives = 11/23 (47%)
 Frame = +2

Query: 107 RARHAGKCACCPACVTLLGEGAT 175
           + RH     CC  C  L G G++
Sbjct: 3   KGRHVVMSCCCWCCDNLGGPGSS 25


>DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 21.0 bits (42), Expect = 8.2
 Identities = 8/31 (25%), Positives = 15/31 (48%)
 Frame = -3

Query: 459 YLYNTYYXXSFLCGLLKXHIFXXQISIFTTV 367
           Y ++TY     LCG  +  +    +S + T+
Sbjct: 39  YFHHTYIIYESLCGRHEKRLLNELLSSYNTL 69


>DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 21.0 bits (42), Expect = 8.2
 Identities = 8/31 (25%), Positives = 15/31 (48%)
 Frame = -3

Query: 459 YLYNTYYXXSFLCGLLKXHIFXXQISIFTTV 367
           Y ++TY     LCG  +  +    +S + T+
Sbjct: 39  YFHHTYIIYESLCGRHEKRLLNELLSSYNTL 69


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 143,390
Number of Sequences: 438
Number of extensions: 3018
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15704448
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)