Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= tesS0726
(548 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_02_0345 + 7664564-7665277,7665672-7665921,7665996-7666015 34 0.086
01_01_0227 + 1933247-1933699 32 0.26
09_06_0356 - 22498300-22498350,22499251-22499425,22499543-22500786 29 3.2
03_01_0491 + 3720842-3720958,3721904-3723109 28 4.3
12_02_0136 + 14109557-14109661,14109742-14109804 27 7.5
11_06_0151 - 20643032-20643085,20643202-20643307,20643415-206434... 27 7.5
09_06_0096 - 20840855-20841994 27 7.5
05_03_0545 - 15244647-15245147,15245342-15245635 27 7.5
12_02_0381 + 18376045-18376114,18376270-18376420,18376524-183766... 27 9.9
05_04_0098 + 17982196-17982355,17982761-17982978,17983232-179834... 27 9.9
01_07_0105 - 41104655-41104851,41105818-41107150 27 9.9
>03_02_0345 + 7664564-7665277,7665672-7665921,7665996-7666015
Length = 327
Score = 33.9 bits (74), Expect = 0.086
Identities = 24/96 (25%), Positives = 45/96 (46%), Gaps = 10/96 (10%)
Frame = +3
Query: 249 PWSSIKSDKDKFQVNLDVQHFAPEEISVKTADGYIVVEGKHEEKKDQ------HGYISRQ 410
PW ++ DK+ ++ D+ + EE+ V D +V+ G+H++++ + G+ +
Sbjct: 134 PWDVMEDDKE-VRMRFDMPGLSREEVKVMVEDDALVIRGEHKKEEGEGAEGSGDGWWKER 192
Query: 411 ----FTRRYALPXGXTAESVEXRLSSDGVLXVIAPR 506
+ R ALP V L +GVL V P+
Sbjct: 193 SVSSYDMRLALPDECDKSKVRAEL-KNGVLLVTVPK 227
>01_01_0227 + 1933247-1933699
Length = 150
Score = 32.3 bits (70), Expect = 0.26
Identities = 17/51 (33%), Positives = 28/51 (54%)
Frame = +3
Query: 357 VEGKHEEKKDQHGYISRQFTRRYALPXGXTAESVEXRLSSDGVLXVIAPRK 509
V+GK++E+ S +F RR+ LP G + V + +GVL V P++
Sbjct: 87 VDGKNDERWHHVERSSGKFQRRFRLPRGARVDQVSASM-DNGVLTVTVPKE 136
>09_06_0356 - 22498300-22498350,22499251-22499425,22499543-22500786
Length = 489
Score = 28.7 bits (61), Expect = 3.2
Identities = 15/32 (46%), Positives = 18/32 (56%)
Frame = +1
Query: 319 KKSLLKRRTATSWLKXNTRRRKISMVTYRVNS 414
KKS T TS K TRRRK+++V Y S
Sbjct: 16 KKSAAGELTTTSEKKKKTRRRKVAVVYYLCRS 47
>03_01_0491 + 3720842-3720958,3721904-3723109
Length = 440
Score = 28.3 bits (60), Expect = 4.3
Identities = 12/33 (36%), Positives = 18/33 (54%)
Frame = -2
Query: 202 AHXGAGCSTEKIFRSQPQAEMLIHEATRTLNFV 104
A G GC K+F S+ +A+ H A +L F+
Sbjct: 391 ADHGRGCKLAKVFESKDEAKASTHTAISSLPFM 423
>12_02_0136 + 14109557-14109661,14109742-14109804
Length = 55
Score = 27.5 bits (58), Expect = 7.5
Identities = 9/19 (47%), Positives = 13/19 (68%)
Frame = +1
Query: 193 PCEQXILPPVGHLAAAARD 249
PC + +LPP+ HL AR+
Sbjct: 9 PCRRRLLPPIAHLLPHARE 27
>11_06_0151 -
20643032-20643085,20643202-20643307,20643415-20643495,
20643588-20643715,20643829-20643903,20644853-20645374,
20646622-20646687,20647990-20648076,20648173-20648247,
20648705-20648821,20648932-20649015,20649152-20649217,
20649352-20649417,20650079-20650150,20650231-20650332,
20650428-20650605,20650700-20650755,20653159-20653269,
20653354-20653422,20653558-20653741,20653826-20653914,
20654070-20654147,20654509-20654631,20654755-20654874,
20654975-20655055,20655285-20655431,20655533-20655611,
20657114-20657223,20659138-20659236,20659467-20659582,
20659673-20659781,20659839-20660069,20660152-20660417,
20661349-20661506,20661601-20661751,20661897-20661966,
20662203-20662232
Length = 1451
Score = 27.5 bits (58), Expect = 7.5
Identities = 16/45 (35%), Positives = 23/45 (51%)
Frame = +3
Query: 264 KSDKDKFQVNLDVQHFAPEEISVKTADGYIVVEGKHEEKKDQHGY 398
+SDKDK N+D + A E + V+ E K +EK + H Y
Sbjct: 502 ESDKDKIMCNVDEKDIA-EHLRVRLKKEQEEKEHKKKEKAEAHLY 545
>09_06_0096 - 20840855-20841994
Length = 379
Score = 27.5 bits (58), Expect = 7.5
Identities = 18/42 (42%), Positives = 20/42 (47%), Gaps = 3/42 (7%)
Frame = +1
Query: 214 PPV---GHLAAAARDLGPASKVIRXXXXXXXXXXXXPRKKSL 330
PPV GHLAAAA L P S+V+ PR SL
Sbjct: 322 PPVPHHGHLAAAAAALLPCSRVVSAATSPAAGPPLPPRTVSL 363
>05_03_0545 - 15244647-15245147,15245342-15245635
Length = 264
Score = 27.5 bits (58), Expect = 7.5
Identities = 13/25 (52%), Positives = 16/25 (64%)
Frame = -3
Query: 372 RVXLQPRCSRPPF*QRFLPGRNAGR 298
R LQPR SRPP ++F GR+ R
Sbjct: 221 RDCLQPRQSRPPHYRQFTRGRHPNR 245
>12_02_0381 +
18376045-18376114,18376270-18376420,18376524-18376681,
18378680-18378945,18379025-18379243,18379309-18379417,
18379488-18379603,18379935-18380033,18381447-18381556,
18382928-18383006,18383127-18383273,18383363-18383443,
18383529-18383648,18383902-18384024,18384276-18384353,
18384459-18384547,18384653-18384761,18385018-18385086,
18385200-18385310,18385657-18385712,18385808-18385985,
18386065-18386166,18386243-18386314,18386489-18386554,
18386674-18386739,18386853-18386936,18387080-18387196,
18388077-18388163,18389321-18389341
Length = 1050
Score = 27.1 bits (57), Expect = 9.9
Identities = 15/45 (33%), Positives = 23/45 (51%)
Frame = +3
Query: 264 KSDKDKFQVNLDVQHFAPEEISVKTADGYIVVEGKHEEKKDQHGY 398
+SDKDK N+D + A E + ++ E K +EK + H Y
Sbjct: 488 ESDKDKIMCNVDEKDIA-EHLRIRLKKEQEEKEHKKKEKAEAHLY 531
>05_04_0098 +
17982196-17982355,17982761-17982978,17983232-17983418,
17983957-17984057,17984708-17984885,17984956-17985233
Length = 373
Score = 27.1 bits (57), Expect = 9.9
Identities = 12/24 (50%), Positives = 12/24 (50%)
Frame = +3
Query: 189 APX*AXXTTARGSPCCRGSRPWSS 260
AP A A CC SRPWSS
Sbjct: 5 APSPASVRAAASPRCCSRSRPWSS 28
>01_07_0105 - 41104655-41104851,41105818-41107150
Length = 509
Score = 27.1 bits (57), Expect = 9.9
Identities = 14/46 (30%), Positives = 25/46 (54%)
Frame = +3
Query: 270 DKDKFQVNLDVQHFAPEEISVKTADGYIVVEGKHEEKKDQHGYISR 407
D K N++ + EEI V+ + I+V + EE++++ ISR
Sbjct: 360 DAKKETSNIEAINVEQEEIKVEEEEEKIIVSQETEEEEEKSAVISR 405
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,263,812
Number of Sequences: 37544
Number of extensions: 245128
Number of successful extensions: 559
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 551
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 559
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1233951264
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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