Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0726
         (548 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_16632| Best HMM Match : HSP20 (HMM E-Value=1e-12)                   66   1e-11
SB_21425| Best HMM Match : HSP20 (HMM E-Value=1.9e-26)                 65   4e-11
SB_38963| Best HMM Match : HSP20 (HMM E-Value=7.3e-26)                 58   4e-09
SB_37349| Best HMM Match : HSP20 (HMM E-Value=7.3e-26)                 58   4e-09
SB_21424| Best HMM Match : HSP20 (HMM E-Value=0)                       57   1e-08
SB_3291| Best HMM Match : No HMM Matches (HMM E-Value=.)               57   1e-08
SB_58906| Best HMM Match : HSP20 (HMM E-Value=3e-26)                   55   3e-08
SB_49292| Best HMM Match : HSP20 (HMM E-Value=1.9e-29)                 54   8e-08
SB_58907| Best HMM Match : HSP20 (HMM E-Value=4.2e-05)                 43   1e-04
SB_24406| Best HMM Match : DUF536 (HMM E-Value=1.5)                    31   0.47 
SB_13144| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   1.9  

>SB_16632| Best HMM Match : HSP20 (HMM E-Value=1e-12)
          Length = 210

 Score = 66.5 bits (155), Expect = 1e-11
 Identities = 33/94 (35%), Positives = 58/94 (61%), Gaps = 1/94 (1%)
 Frame = +3

Query: 255 SSIKSDKDKFQV-NLDVQHFAPEEISVKTADGYIVVEGKHEEKKDQHGYISRQFTRRYAL 431
           ++ + + DK ++  LDV+++ PEEIS+K   G I ++GKH+ +  +HGY + +F R Y L
Sbjct: 31  ANTEMEGDKVEIATLDVKNYRPEEISLKVEHGRIKIDGKHKSE-GEHGYETSEFHRSYNL 89

Query: 432 PXGXTAESVEXRLSSDGVLXVIAPRKCRQQWRVN 533
           P G    +V  R++ DG+L + A +   Q+  V+
Sbjct: 90  PDGVDVSTVSSRITGDGLLHIEALKAEPQETEVS 123


>SB_21425| Best HMM Match : HSP20 (HMM E-Value=1.9e-26)
          Length = 185

 Score = 64.9 bits (151), Expect = 4e-11
 Identities = 34/81 (41%), Positives = 49/81 (60%), Gaps = 1/81 (1%)
 Frame = +3

Query: 270 DKDKFQV-NLDVQHFAPEEISVKTADGYIVVEGKHEEKKDQHGYISRQFTRRYALPXGXT 446
           D DKFQ+  LDV+ F PEEI+ K  +G I V G    + ++ G+ S++F R Y LP G  
Sbjct: 2   DADKFQIATLDVREFKPEEITCKVENGKIKVSGLQRHESEE-GFDSKEFRRCYNLPEGVD 60

Query: 447 AESVEXRLSSDGVLXVIAPRK 509
             S+  R++ DG+L V A +K
Sbjct: 61  ESSISTRIAEDGMLHVEALKK 81



 Score = 54.4 bits (125), Expect = 6e-08
 Identities = 30/85 (35%), Positives = 46/85 (54%), Gaps = 1/85 (1%)
 Frame = +3

Query: 270 DKDKFQVNLDVQHFAPEEISVKTADGYIVVEGKHEEKKDQHGYIS-RQFTRRYALPXGXT 446
           D  KF + LDV  F PEE+ VK     + V  + E   ++HG+ + RQF R + LP    
Sbjct: 96  DDTKFTLALDVSDFKPEEVDVKVYGHELSVRARQE--CEEHGFFTARQFNRHFVLPREVD 153

Query: 447 AESVEXRLSSDGVLXVIAPRKCRQQ 521
            +++  RL  DGVL + A ++  +Q
Sbjct: 154 MDTLVPRLGKDGVLYIEADKRPLRQ 178


>SB_38963| Best HMM Match : HSP20 (HMM E-Value=7.3e-26)
          Length = 190

 Score = 58.4 bits (135), Expect = 4e-09
 Identities = 28/79 (35%), Positives = 51/79 (64%), Gaps = 1/79 (1%)
 Frame = +3

Query: 267 SDKDKFQV-NLDVQHFAPEEISVKTADGYIVVEGKHEEKKDQHGYISRQFTRRYALPXGX 443
           ++++K ++  LDV+ + PEEIS K  +G++ V+G+H   +   G+  ++F R +ALP G 
Sbjct: 2   ANENKLEIAKLDVREYRPEEISFKVENGFVKVQGRH-VNEGPFGFELKEFRRTFALPEGV 60

Query: 444 TAESVEXRLSSDGVLXVIA 500
            A +V+ R+S+ G L + A
Sbjct: 61  EASNVKTRISNHGQLHIEA 79



 Score = 48.0 bits (109), Expect = 5e-06
 Identities = 24/78 (30%), Positives = 40/78 (51%)
 Frame = +3

Query: 276 DKFQVNLDVQHFAPEEISVKTADGYIVVEGKHEEKKDQHGYISRQFTRRYALPXGXTAES 455
           DKF + +DV  F P+ I V+     ++V   HE + + H Y +  F R++ LP     +S
Sbjct: 97  DKFSMAMDVTGFPPDSIKVQVLGNELLVSANHEVEHEGH-YHAMHFNRQFVLPREVDMDS 155

Query: 456 VEXRLSSDGVLXVIAPRK 509
           +  RL  +G L   A ++
Sbjct: 156 LTTRLDKEGKLHFEAKKR 173


>SB_37349| Best HMM Match : HSP20 (HMM E-Value=7.3e-26)
          Length = 190

 Score = 58.4 bits (135), Expect = 4e-09
 Identities = 28/79 (35%), Positives = 51/79 (64%), Gaps = 1/79 (1%)
 Frame = +3

Query: 267 SDKDKFQV-NLDVQHFAPEEISVKTADGYIVVEGKHEEKKDQHGYISRQFTRRYALPXGX 443
           ++++K ++  LDV+ + PEEIS K  +G++ V+G+H   +   G+  ++F R +ALP G 
Sbjct: 2   ANENKLEIAKLDVREYRPEEISFKVENGFVKVQGRH-VNEGPFGFELKEFRRTFALPEGV 60

Query: 444 TAESVEXRLSSDGVLXVIA 500
            A +V+ R+S+ G L + A
Sbjct: 61  EASNVKTRISNHGQLHIEA 79



 Score = 48.0 bits (109), Expect = 5e-06
 Identities = 24/78 (30%), Positives = 40/78 (51%)
 Frame = +3

Query: 276 DKFQVNLDVQHFAPEEISVKTADGYIVVEGKHEEKKDQHGYISRQFTRRYALPXGXTAES 455
           DKF + +DV  F P+ I V+     ++V   HE + + H Y +  F R++ LP     +S
Sbjct: 97  DKFSMAMDVTGFPPDSIKVQVLGNELLVSANHEVEHEGH-YHAMHFNRQFVLPREVDMDS 155

Query: 456 VEXRLSSDGVLXVIAPRK 509
           +  RL  +G L   A ++
Sbjct: 156 LTTRLDKEGKLHFEAKKR 173


>SB_21424| Best HMM Match : HSP20 (HMM E-Value=0)
          Length = 424

 Score = 56.8 bits (131), Expect = 1e-08
 Identities = 27/79 (34%), Positives = 50/79 (63%), Gaps = 1/79 (1%)
 Frame = +3

Query: 267 SDKDKFQV-NLDVQHFAPEEISVKTADGYIVVEGKHEEKKDQHGYISRQFTRRYALPXGX 443
           ++++K ++  LDV+ + PEEIS K  +G++ V+G+H   +   G+  ++F R + LP G 
Sbjct: 2   ANENKLEIAKLDVREYRPEEISFKVENGFVKVQGRH-VNEGPFGFELKEFRRTFTLPEGV 60

Query: 444 TAESVEXRLSSDGVLXVIA 500
            A +V+ R+S+ G L + A
Sbjct: 61  EASNVKTRISNHGQLHIEA 79



 Score = 56.0 bits (129), Expect = 2e-08
 Identities = 27/76 (35%), Positives = 47/76 (61%), Gaps = 1/76 (1%)
 Frame = +3

Query: 276 DKFQV-NLDVQHFAPEEISVKTADGYIVVEGKHEEKKDQHGYISRQFTRRYALPXGXTAE 452
           D+ ++  LDV+ + PEEIS K  +G++ V+G+H   +   G+  ++F R + LP G  A 
Sbjct: 239 DELEIAKLDVREYRPEEISFKVENGFVKVQGRH-VNEGPFGFELKEFRRTFTLPEGVEAS 297

Query: 453 SVEXRLSSDGVLXVIA 500
           +V+ R+S+ G L + A
Sbjct: 298 NVKTRISNHGQLHIEA 313



 Score = 48.0 bits (109), Expect = 5e-06
 Identities = 24/78 (30%), Positives = 40/78 (51%)
 Frame = +3

Query: 276 DKFQVNLDVQHFAPEEISVKTADGYIVVEGKHEEKKDQHGYISRQFTRRYALPXGXTAES 455
           DKF + +DV  F P+ I V+     ++V   HE + + H Y +  F R++ LP     +S
Sbjct: 97  DKFSMAMDVTGFPPDSIKVQVLGNELLVSANHEVEHEGH-YHAMHFNRQFVLPREVDMDS 155

Query: 456 VEXRLSSDGVLXVIAPRK 509
           +  RL  +G L   A ++
Sbjct: 156 LTTRLDKEGKLHFEAKKR 173



 Score = 48.0 bits (109), Expect = 5e-06
 Identities = 24/78 (30%), Positives = 40/78 (51%)
 Frame = +3

Query: 276 DKFQVNLDVQHFAPEEISVKTADGYIVVEGKHEEKKDQHGYISRQFTRRYALPXGXTAES 455
           DKF + +DV  F P+ I V+     ++V   HE + + H Y +  F R++ LP     +S
Sbjct: 331 DKFSMAMDVTGFPPDSIKVQVLGNELLVSANHEVEHEGH-YHAMHFNRQFVLPREVDMDS 389

Query: 456 VEXRLSSDGVLXVIAPRK 509
           +  RL  +G L   A ++
Sbjct: 390 LTTRLDKEGKLHFEAKKR 407


>SB_3291| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 760

 Score = 56.8 bits (131), Expect = 1e-08
 Identities = 27/79 (34%), Positives = 50/79 (63%), Gaps = 1/79 (1%)
 Frame = +3

Query: 267 SDKDKFQV-NLDVQHFAPEEISVKTADGYIVVEGKHEEKKDQHGYISRQFTRRYALPXGX 443
           ++++K ++  LDV+ + PEEIS K  +G++ V+G+H   +   G+  ++F R + LP G 
Sbjct: 2   ANENKLEIAKLDVREYRPEEISFKVENGFVKVQGRH-VNEGPFGFELKEFRRTFTLPEGV 60

Query: 444 TAESVEXRLSSDGVLXVIA 500
            A +V+ R+S+ G L + A
Sbjct: 61  EASNVKTRISNHGQLHIEA 79



 Score = 48.0 bits (109), Expect = 5e-06
 Identities = 24/78 (30%), Positives = 40/78 (51%)
 Frame = +3

Query: 276 DKFQVNLDVQHFAPEEISVKTADGYIVVEGKHEEKKDQHGYISRQFTRRYALPXGXTAES 455
           DKF + +DV  F P+ I V+     ++V   HE + + H Y +  F R++ LP     +S
Sbjct: 97  DKFSMAMDVTGFPPDSIKVQVLGNELLVSANHEVEHEGH-YHAMHFNRQFVLPREVDMDS 155

Query: 456 VEXRLSSDGVLXVIAPRK 509
           +  RL  +G L   A ++
Sbjct: 156 LTTRLDKEGKLHFEAKKR 173


>SB_58906| Best HMM Match : HSP20 (HMM E-Value=3e-26)
          Length = 695

 Score = 55.2 bits (127), Expect = 3e-08
 Identities = 27/79 (34%), Positives = 49/79 (62%), Gaps = 1/79 (1%)
 Frame = +3

Query: 267 SDKDKFQV-NLDVQHFAPEEISVKTADGYIVVEGKHEEKKDQHGYISRQFTRRYALPXGX 443
           ++++K ++  LDV+ + PEEIS K  +G + V+G+H   +   G+  ++F R + LP G 
Sbjct: 3   NNENKLEIAKLDVREYRPEEISFKVENGVVKVQGRH-VNEGPFGFELKEFRRTFTLPEGV 61

Query: 444 TAESVEXRLSSDGVLXVIA 500
            A +V+ R+S+ G L + A
Sbjct: 62  EASNVKTRISNHGQLHIEA 80



 Score = 50.4 bits (115), Expect = 9e-07
 Identities = 26/82 (31%), Positives = 43/82 (52%)
 Frame = +3

Query: 264 KSDKDKFQVNLDVQHFAPEEISVKTADGYIVVEGKHEEKKDQHGYISRQFTRRYALPXGX 443
           +S  DKF + +DV+ F PE I V+     ++V   HE + + H Y +  F R++ LP   
Sbjct: 93  ESKDDKFSMAMDVKGFPPEAIKVQVLGNELLVSANHEVEHEGH-YHAMHFNRQFILPREV 151

Query: 444 TAESVEXRLSSDGVLXVIAPRK 509
             +S+  RL  +G L   A ++
Sbjct: 152 DMDSLTTRLDKEGKLHFEAKKR 173


>SB_49292| Best HMM Match : HSP20 (HMM E-Value=1.9e-29)
          Length = 189

 Score = 54.0 bits (124), Expect = 8e-08
 Identities = 26/69 (37%), Positives = 42/69 (60%)
 Frame = +3

Query: 294 LDVQHFAPEEISVKTADGYIVVEGKHEEKKDQHGYISRQFTRRYALPXGXTAESVEXRLS 473
           LDV+ + PEEIS K  +G + V+G+H   + + G+  ++F R + LP G   E+V  R+S
Sbjct: 12  LDVKEYRPEEISFKVENGVVKVQGRH-VNEGEFGFELKEFRRTFTLPEGIDPENVTSRIS 70

Query: 474 SDGVLXVIA 500
           + G L + A
Sbjct: 71  NHGHLHIEA 79



 Score = 50.8 bits (116), Expect = 7e-07
 Identities = 25/75 (33%), Positives = 40/75 (53%)
 Frame = +3

Query: 264 KSDKDKFQVNLDVQHFAPEEISVKTADGYIVVEGKHEEKKDQHGYISRQFTRRYALPXGX 443
           K+ +DKF + +DV  F PE I V+     ++V   HE + + H Y +  F R++ LP   
Sbjct: 92  KAKEDKFSMAIDVAGFPPESIKVQVLGNELLVNANHEVEHEGH-YHAMHFNRQFVLPREV 150

Query: 444 TAESVEXRLSSDGVL 488
             +S+  RL  +G L
Sbjct: 151 DMDSLTTRLDKEGKL 165


>SB_58907| Best HMM Match : HSP20 (HMM E-Value=4.2e-05)
          Length = 259

 Score = 43.2 bits (97), Expect = 1e-04
 Identities = 23/61 (37%), Positives = 33/61 (54%), Gaps = 1/61 (1%)
 Frame = +3

Query: 255 SSIKSDKDKFQVNLDVQHFAPEEISVKTADGYIVVEGKHEEKKDQHGYI-SRQFTRRYAL 431
           S+   D  KF + LDV  F PEE+ VK     + V  + E   ++HG+  +RQF R + L
Sbjct: 19  SAATKDDTKFTLALDVSDFKPEEVDVKVYGHELSVRARQE--CEEHGFFTARQFNRHFVL 76

Query: 432 P 434
           P
Sbjct: 77  P 77


>SB_24406| Best HMM Match : DUF536 (HMM E-Value=1.5)
          Length = 436

 Score = 31.5 bits (68), Expect = 0.47
 Identities = 11/22 (50%), Positives = 18/22 (81%)
 Frame = +3

Query: 366 KHEEKKDQHGYISRQFTRRYAL 431
           KHEE++D+HGY+  + T ++AL
Sbjct: 72  KHEEREDRHGYLKDKVTLQHAL 93


>SB_13144| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 266

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 11/35 (31%), Positives = 18/35 (51%)
 Frame = +3

Query: 330 VKTADGYIVVEGKHEEKKDQHGYISRQFTRRYALP 434
           +++A GY+V  G H  K +  G +    + R  LP
Sbjct: 10  IRSARGYVVTSGSHTSKSEVRGIMEETCSNRNPLP 44


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,537,935
Number of Sequences: 59808
Number of extensions: 263130
Number of successful extensions: 582
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 500
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 579
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1264269032
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)