Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0726
         (548 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g53540.1 68414.m06074 17.6 kDa class I small heat shock prote...    37   0.010
At2g29500.1 68415.m03583 17.6 kDa class I small heat shock prote...    33   0.17 
At4g13700.1 68417.m02128 serine/threonine protein phosphatase fa...    29   1.5  
At2g27980.1 68415.m03391 expressed protein                             28   3.6  
At1g78910.1 68414.m09199 pseudouridine synthase family protein l...    28   4.7  
At5g42760.1 68418.m05207 O-methyltransferase N-terminus domain-c...    27   6.2  

>At1g53540.1 68414.m06074 17.6 kDa class I small heat shock protein
           (HSP17.6C-CI) (AA 1-156) identical to (17.6 kDa class I
           heat shock protein (HSP 17.6) (AA 1-156)(SP:P13853)
           (GI:4376161) (Arabidopsis thaliana) (Nucleic Acids Res.
           17 (19), 7995 (1989))
          Length = 157

 Score = 36.7 bits (81), Expect = 0.010
 Identities = 25/78 (32%), Positives = 41/78 (52%), Gaps = 8/78 (10%)
 Frame = +3

Query: 297 DVQHFAPEEISVKTADGYIV-VEGK----HEEKKDQHGYISR---QFTRRYALPXGXTAE 452
           D+     EE+ V+  DG I+ + G+    +EEK D+   + R   +FTRR+ LP     E
Sbjct: 66  DLPGLRKEEVKVEVEDGNILQISGERSNENEEKNDKWHRVERSSGKFTRRFRLPENAKME 125

Query: 453 SVEXRLSSDGVLXVIAPR 506
            ++  +  +GVL V  P+
Sbjct: 126 EIKASM-ENGVLSVTVPK 142


>At2g29500.1 68415.m03583 17.6 kDa class I small heat shock protein
           (HSP17.6B-CI) contains Pfam PF00011: Hsp20/alpha
           crystallin family; identified in Scharf, K-D., et al,
           Cell Stress & Chaperones (2001) 6: 225-237.
          Length = 153

 Score = 32.7 bits (71), Expect = 0.17
 Identities = 24/78 (30%), Positives = 39/78 (50%), Gaps = 8/78 (10%)
 Frame = +3

Query: 297 DVQHFAPEEISVKTA-DGYIVVEG-KHEEKKDQHGYISR------QFTRRYALPXGXTAE 452
           D+     EE+ V+   D  + + G +H EK+D++    R      QFTRR+ LP     +
Sbjct: 62  DLPGLKKEEVKVEIEEDSVLKISGERHVEKEDKNDTWHRVERSSGQFTRRFRLPENVKMD 121

Query: 453 SVEXRLSSDGVLXVIAPR 506
            V+  +  +GVL V  P+
Sbjct: 122 QVKAAM-ENGVLTVTVPK 138


>At4g13700.1 68417.m02128 serine/threonine protein phosphatase
           family protein contains Pfam domain PF00149: Ser/Thr
           protein phosphatase
          Length = 474

 Score = 29.5 bits (63), Expect = 1.5
 Identities = 21/87 (24%), Positives = 38/87 (43%)
 Frame = +3

Query: 219 RGSPCCRGSRPWSSIKSDKDKFQVNLDVQHFAPEEISVKTADGYIVVEGKHEEKKDQHGY 398
           +G PC   S P + I+   + +Q   D      E ++ K     +V+EG HE +    G 
Sbjct: 240 KGVPCFSCSFPDAPIR---ETYQPRWDAWGRFMEPLTSKVPT--MVIEGNHEIEPQASGI 294

Query: 399 ISRQFTRRYALPXGXTAESVEXRLSSD 479
             + ++ R+A+P   +  +     S D
Sbjct: 295 TFKSYSERFAVPASESGSNSNLYYSFD 321


>At2g27980.1 68415.m03391 expressed protein
          Length = 1037

 Score = 28.3 bits (60), Expect = 3.6
 Identities = 16/46 (34%), Positives = 25/46 (54%)
 Frame = +3

Query: 228 PCCRGSRPWSSIKSDKDKFQVNLDVQHFAPEEISVKTADGYIVVEG 365
           PC R +R  S +K +  K +VN D  H  PE+ ++ + D  + V G
Sbjct: 205 PCKRLTR--SMLKVEGIKSEVNADDDHVNPEKDAIGSEDNCVDVSG 248


>At1g78910.1 68414.m09199 pseudouridine synthase family protein low
           similarity to SP|P23851 Ribosomal large subunit
           pseudouridine synthase C (EC 4.2.1.70) (Pseudouridylate
           synthase) (Uracil hydrolyase) {Escherichia coli};
           contains Pfam profile PF00849: RNA pseudouridylate
           synthase
          Length = 478

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 17/37 (45%), Positives = 19/37 (51%), Gaps = 2/37 (5%)
 Frame = -3

Query: 396 NHADLSSPRVXLQPR--CSRPPF*QRFLPGRNAGRPG 292
           N A L  P+    PR   S PPF    LPG+NAG  G
Sbjct: 36  NVAHLGPPKQGPLPRQLISLPPFPGHPLPGKNAGADG 72


>At5g42760.1 68418.m05207 O-methyltransferase N-terminus
           domain-containing protein contains Pfam profile PF02409:
           O-methyltransferase N-terminus
          Length = 344

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 20/70 (28%), Positives = 26/70 (37%)
 Frame = +3

Query: 30  SLQNLVKHLYKSTTTKCRXFRGYXITKLSVLVASWINISAWG*LRKIFSVLQPAPX*AXX 209
           +L N V H Y     +     G+   KLS +     N       R +F+ L   P  A  
Sbjct: 257 TLPNSVFHFYSDWPDQLLPTLGFSHVKLSQIGDPDANFGLLHDPRNLFNKLLRLPRTAQI 316

Query: 210 TTARGSPCCR 239
               G PCCR
Sbjct: 317 HPDDGKPCCR 326


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,091,591
Number of Sequences: 28952
Number of extensions: 172456
Number of successful extensions: 407
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 400
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 407
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1033331880
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)