Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0725
         (389 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_1131 + 27872870-27872958,27873036-27873281,27874058-278741...    27   4.0  
07_01_0636 + 4761858-4762421,4763596-4763819,4763961-4764309,476...    27   7.0  
04_01_0055 + 576483-576584,576684-576865,576950-577316,577391-57...    27   7.0  

>06_03_1131 +
           27872870-27872958,27873036-27873281,27874058-27874163,
           27874665-27875209,27875455-27875914,27876234-27876319,
           27877092-27877194
          Length = 544

 Score = 27.5 bits (58), Expect = 4.0
 Identities = 14/33 (42%), Positives = 19/33 (57%), Gaps = 2/33 (6%)
 Frame = -3

Query: 111 LYSILHF--RFKPVCLFSTLLRRKLHKCTNIDY 19
           L  I HF  RFK V L   +L R+LH   ++D+
Sbjct: 503 LMDIDHFAMRFKQVILIVCILARRLHSAGDVDF 535


>07_01_0636 +
           4761858-4762421,4763596-4763819,4763961-4764309,
           4764648-4765331
          Length = 606

 Score = 26.6 bits (56), Expect = 7.0
 Identities = 11/33 (33%), Positives = 19/33 (57%)
 Frame = -1

Query: 386 PSTTHLYFFRYTNNLMVKLIYKPYSKHLYSILR 288
           P   H++F  ++   MVK+IY+P S  +  + R
Sbjct: 315 PDQAHVFFLPFSVVKMVKMIYEPNSHDMDPLRR 347


>04_01_0055 +
           576483-576584,576684-576865,576950-577316,577391-578065
          Length = 441

 Score = 26.6 bits (56), Expect = 7.0
 Identities = 9/26 (34%), Positives = 17/26 (65%)
 Frame = -1

Query: 386 PSTTHLYFFRYTNNLMVKLIYKPYSK 309
           P+  H +F  ++ + MVK +Y+P S+
Sbjct: 153 PTRAHAFFLPFSVSQMVKFVYRPPSQ 178


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,094,898
Number of Sequences: 37544
Number of extensions: 99463
Number of successful extensions: 131
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 130
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 131
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 660830060
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)