Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0725
         (389 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_17243| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   1.0  
SB_38058| Best HMM Match : TP2 (HMM E-Value=0.072)                     27   7.2  

>SB_17243| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 778

 Score = 29.5 bits (63), Expect = 1.0
 Identities = 16/40 (40%), Positives = 24/40 (60%), Gaps = 2/40 (5%)
 Frame = -2

Query: 307 IYIQYFDK--NQQWNIK*KYTLKFY*LIASKIPKISMDKR 194
           +Y+QY  K  +  +NIK KY L FY   +S +PK +  +R
Sbjct: 167 VYMQYLPKYRSPHFNIKSKYNLPFY---SSNMPKFANQRR 203


>SB_38058| Best HMM Match : TP2 (HMM E-Value=0.072)
          Length = 399

 Score = 26.6 bits (56), Expect = 7.2
 Identities = 17/81 (20%), Positives = 34/81 (41%)
 Frame = -1

Query: 284 KSTMEYQIEIYVKILLTHRIQNTEDING*KVNS*FAVKHKNEYKYKIDTFLSIHTNYNYI 105
           K  + Y++ +  K+ + +++     ++   VN    V +K    YK+     +  NY + 
Sbjct: 21  KFPVNYKVPVNYKVPVNYKVPVNYKVS---VNYKVPVNYKVSVNYKVSVNYKVSVNYKFP 77

Query: 104 PYYIFDSNQFVYFQHY*DVNF 42
             Y F  N  V   +   VN+
Sbjct: 78  VNYKFPVNYKVPVNYKVPVNY 98



 Score = 26.6 bits (56), Expect = 7.2
 Identities = 18/81 (22%), Positives = 33/81 (40%)
 Frame = -1

Query: 284 KSTMEYQIEIYVKILLTHRIQNTEDING*KVNS*FAVKHKNEYKYKIDTFLSIHTNYNYI 105
           K  + Y++ +  K+ + +++     +    VN  F V +K    YK+     +  NY   
Sbjct: 93  KVPVNYKVSVNYKVPVNYKVSVNYKV---PVNYKFPVNYKVSVNYKVPVNYKVPVNYKVP 149

Query: 104 PYYIFDSNQFVYFQHY*DVNF 42
             Y F  N  V   +   VN+
Sbjct: 150 VNYKFPVNYKVSVNYKFIVNY 170


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,005,374
Number of Sequences: 59808
Number of extensions: 136078
Number of successful extensions: 215
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 191
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 211
length of database: 16,821,457
effective HSP length: 74
effective length of database: 12,395,665
effective search space used: 681761575
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)