Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0719
         (598 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    29   0.39 
SPAC3A12.13c |||translation initiation factor eIF3 complex subun...    29   0.68 
SPAC637.07 |moe1||translation initiation factor eIF3d Moe1|Schiz...    28   1.2  
SPCC1795.03 |gms1||UDP-galactose transporter Gms1|Schizosaccharo...    27   2.7  
SPAC26A3.01 |sxa1|SPAC2E1P5.06|aspartic protease Sxa1 |Schizosac...    26   3.6  
SPBC17G9.13c |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    26   4.8  
SPBC32H8.02c |nep2|mug120|nedd8 protease Nep2|Schizosaccharomyce...    25   6.3  
SPCC4B3.10c |ipk1||inositol 1,3,4,5,6-pentakisphosphate |Schizos...    25   8.4  
SPAC16A10.07c |taz1|myb1, myb|human TRF ortholog Taz1|Schizosacc...    25   8.4  

>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 534

 Score = 29.5 bits (63), Expect = 0.39
 Identities = 25/84 (29%), Positives = 41/84 (48%)
 Frame = +2

Query: 86  SASSXMLTAYVVASTAFAISLVFWAVSKPTSTSRTLLSVVNSISSRLTFVEVVSVGLQLA 265
           S+SS   TA   +S++  IS    + S PTSTS T+ S  +S SS  +    +S     +
Sbjct: 255 SSSSSSSTASSSSSSSSIISSSSSSSSSPTSTSSTISSSSSSSSSPTSTSSTISSSSSSS 314

Query: 266 SCYPLAAFASAGR*FSTRLSRKPS 337
           S +  +  +S+    S+  S  P+
Sbjct: 315 SSFS-STLSSSSMSSSSSFSSSPT 337


>SPAC3A12.13c |||translation initiation factor eIF3 complex
           subunit|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 274

 Score = 28.7 bits (61), Expect = 0.68
 Identities = 21/75 (28%), Positives = 37/75 (49%), Gaps = 2/75 (2%)
 Frame = -3

Query: 452 QKDINVKAKNGVLMVQAXSAFNHYLK--IQNLPWDVNSEGSWVYEKDVLKITFPLKQKQP 279
           Q DI  K KN     Q  + +N++++  I  L   +N+      +K V K+    +Q++ 
Sbjct: 157 QADILKKVKN----CQTTAEYNNFVQDLIPLLLTGLNATNLKAVQKSVNKLVVNKEQQEK 212

Query: 278 EDSKRPVASPLRRPL 234
             SKR  A+P  +P+
Sbjct: 213 TQSKRGAAAPAAKPV 227


>SPAC637.07 |moe1||translation initiation factor eIF3d
           Moe1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 567

 Score = 27.9 bits (59), Expect = 1.2
 Identities = 13/38 (34%), Positives = 20/38 (52%)
 Frame = -2

Query: 186 RDVDVGLETAQKTNEIAKAVEATTYAVNIXDDAEFXPI 73
           RDVD+ LET +K  ++    E   Y  N  +D ++  I
Sbjct: 379 RDVDLSLETDEKPVKLMVRTEVDGYVKNPANDVQYISI 416


>SPCC1795.03 |gms1||UDP-galactose transporter
           Gms1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 353

 Score = 26.6 bits (56), Expect = 2.7
 Identities = 13/36 (36%), Positives = 18/36 (50%), Gaps = 2/36 (5%)
 Frame = -1

Query: 565 QHLDNMMKELSLK--FPSIINKDAWKATSIRYLFTC 464
           Q   N+ KE  L+   P I   D+WK     +L+TC
Sbjct: 72  QFRKNVGKEAKLRAFLPQIFGGDSWKLAIPAFLYTC 107


>SPAC26A3.01 |sxa1|SPAC2E1P5.06|aspartic protease Sxa1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 533

 Score = 26.2 bits (55), Expect = 3.6
 Identities = 13/33 (39%), Positives = 20/33 (60%)
 Frame = +2

Query: 86  SASSXMLTAYVVASTAFAISLVFWAVSKPTSTS 184
           S S+    +  +A+T+F  SLV  A + P+STS
Sbjct: 463 SVSATPTVSMSIAATSFGSSLVLTASASPSSTS 495


>SPBC17G9.13c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 317

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 9/24 (37%), Positives = 17/24 (70%)
 Frame = -1

Query: 586 PTLPNEMQHLDNMMKELSLKFPSI 515
           P LP+E  HL +++ +++L+ P I
Sbjct: 225 PLLPHEYHHLHSLLLDVTLRNPQI 248


>SPBC32H8.02c |nep2|mug120|nedd8 protease Nep2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 415

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = -3

Query: 314 LKITFPLKQKQPEDSKRPVASPLRRP 237
           L +T P  +  P+   +P +SP+RRP
Sbjct: 347 LPLTHPNSEPNPKLDSQPNSSPVRRP 372


>SPCC4B3.10c |ipk1||inositol 1,3,4,5,6-pentakisphosphate
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 640

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = -1

Query: 559 LDNMMKELSLKFPSIINKDAWKATSIRYLFTCL 461
           LD++ K L+L FP++I K       +   F CL
Sbjct: 179 LDDLQKHLTLSFPTLIAKSRVFFGQLMKHFYCL 211


>SPAC16A10.07c |taz1|myb1, myb|human TRF ortholog
           Taz1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 663

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 14/46 (30%), Positives = 24/46 (52%)
 Frame = -2

Query: 261 SCKPTETTSTNVSREEMEFTTESNVRDVDVGLETAQKTNEIAKAVE 124
           S + TET    +  E  +   +  V++ D  +ET Q ++ + KAVE
Sbjct: 3   SVQSTETIQKVLENEGDQQFDKEVVQNSDSNIETGQISDSLTKAVE 48


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,307,955
Number of Sequences: 5004
Number of extensions: 44698
Number of successful extensions: 141
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 135
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 140
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 260219058
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)