Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= tesS0719
(598 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_02_1052 - 25698263-25698394,25698587-25698679,25698945-256989... 31 0.53
01_07_0248 + 42261373-42261609,42261733-42261905,42261986-422620... 31 0.53
01_01_0659 - 5021159-5021266,5021364-5021494,5021619-5021785,502... 31 0.70
06_02_0032 + 10775031-10775520,10775661-10776246,10776333-107769... 30 1.2
07_01_0663 + 4975950-4977688,4978183-4978528 30 1.6
09_04_0579 + 18676165-18676524,18676846-18677058,18677136-186772... 29 2.8
08_02_1129 - 24513568-24514296,24515380-24515817 29 3.7
05_03_0626 - 16335816-16335917,16336331-16336558,16336694-163369... 28 4.9
11_06_0645 - 25814302-25814759,25814853-25815005,25815032-258152... 27 8.6
10_01_0028 - 359988-359996,360228-360332,360415-360536,360676-36... 27 8.6
>12_02_1052 -
25698263-25698394,25698587-25698679,25698945-25698995,
25699074-25699258,25699361-25699407,25699704-25699918
Length = 240
Score = 31.5 bits (68), Expect = 0.53
Identities = 17/38 (44%), Positives = 23/38 (60%)
Frame = -3
Query: 194 ATCGTLTSAWRQPRRPMRSRKL*KRPRTLSTSETMRSS 81
A C TS+ R+ RRPMR+ +R RT S++ T R S
Sbjct: 40 ACCTAATSSTRRSRRPMRASASSRRRRTPSSTWTPRPS 77
>01_07_0248 + 42261373-42261609,42261733-42261905,42261986-42262058,
42262148-42262282,42262352-42262562,42262886-42263034,
42263169-42263267,42263821-42263989,42264176-42264308,
42264600-42264694,42264774-42264882,42265136-42265295,
42265433-42265594,42265814-42265985,42266254-42266402,
42266914-42266951,42267779-42267839,42267913-42268155,
42268233-42268315,42269521-42269609,42270449-42270495,
42270576-42270656,42270737-42270899,42271077-42271267,
42271691-42271762
Length = 1097
Score = 31.5 bits (68), Expect = 0.53
Identities = 15/44 (34%), Positives = 23/44 (52%)
Frame = -3
Query: 311 KITFPLKQKQPEDSKRPVASPLRRPLRM*VVKRWSSPPRATCGT 180
+I P +Q P +RP + P+RR V+R +PPR G+
Sbjct: 1030 RIESPRRQPDPSPRRRPDSPPIRRRADASPVRRGDTPPRRRPGS 1073
>01_01_0659 -
5021159-5021266,5021364-5021494,5021619-5021785,
5021950-5022065,5022226-5022381,5022570-5022678,
5023153-5023262,5023807-5023992,5024077-5024667
Length = 557
Score = 31.1 bits (67), Expect = 0.70
Identities = 11/27 (40%), Positives = 19/27 (70%)
Frame = -3
Query: 512 KQGRVEGDKYQISIHLPGYEQKDINVK 432
K+ +VEGD Y + +H PG+ K ++V+
Sbjct: 222 KEEKVEGDGYSLGLHAPGFFDKVLHVE 248
>06_02_0032 +
10775031-10775520,10775661-10776246,10776333-10776973,
10777270-10777973
Length = 806
Score = 30.3 bits (65), Expect = 1.2
Identities = 20/81 (24%), Positives = 40/81 (49%), Gaps = 1/81 (1%)
Frame = -2
Query: 324 ERRVENHLPAEAKAARG*QEASCKPTETTSTNVSREEMEFTTESNVRDV-DVGLETAQKT 148
ER V+ PA+ + + + KP+ET S + +E+ T +++ + + T+ +T
Sbjct: 584 ERVVQKSPPAQDEDVIEQETQTLKPSETMSADEIKEDDRTTKSADIENAGEAKNNTSNET 643
Query: 147 NEIAKAVEATTYAVNIXDDAE 85
NE K A T + D+++
Sbjct: 644 NEKEKQERAATESNEKEDESK 664
>07_01_0663 + 4975950-4977688,4978183-4978528
Length = 694
Score = 29.9 bits (64), Expect = 1.6
Identities = 23/69 (33%), Positives = 34/69 (49%)
Frame = +3
Query: 342 FGIHIPGKVLYFQVMIKSTXSLHHQHSIFRFHVDVFLFVTRQVNRYLILVAFHASLFIML 521
F + + G+ LYF VM+ + SL +S F V + V + Y ++AF A F+
Sbjct: 541 FALRLHGQFLYFLVMVYA--SLLSTNS---FVVFISSVVPNFILGYAAVIAFTALFFLFC 595
Query: 522 GNFNDSSFI 548
G F DS I
Sbjct: 596 GYFLDSHSI 604
>09_04_0579 +
18676165-18676524,18676846-18677058,18677136-18677288,
18677503-18677622,18677696-18677782,18677876-18678313
Length = 456
Score = 29.1 bits (62), Expect = 2.8
Identities = 12/23 (52%), Positives = 14/23 (60%)
Frame = -3
Query: 209 SSPPRATCGTLTSAWRQPRRPMR 141
SS PR C LTS +R+P P R
Sbjct: 26 SSTPRRRCAALTSRFREPASPRR 48
>08_02_1129 - 24513568-24514296,24515380-24515817
Length = 388
Score = 28.7 bits (61), Expect = 3.7
Identities = 12/22 (54%), Positives = 14/22 (63%)
Frame = +3
Query: 150 SSGLSPSRRQRPARCSRW*TPS 215
+S +SP QR A CSRW PS
Sbjct: 259 ASAVSPPAEQRAACCSRWWVPS 280
>05_03_0626 -
16335816-16335917,16336331-16336558,16336694-16336973,
16337596-16338560
Length = 524
Score = 28.3 bits (60), Expect = 4.9
Identities = 11/25 (44%), Positives = 13/25 (52%)
Frame = -3
Query: 215 RWSSPPRATCGTLTSAWRQPRRPMR 141
RW+ PP C T S + P RP R
Sbjct: 120 RWAPPPAPRCSTPLSPYSPPFRPAR 144
>11_06_0645 -
25814302-25814759,25814853-25815005,25815032-25815214,
25815342-25815531,25815624-25815784,25816136-25816623,
25817035-25817075
Length = 557
Score = 27.5 bits (58), Expect = 8.6
Identities = 14/50 (28%), Positives = 23/50 (46%)
Frame = -3
Query: 509 QGRVEGDKYQISIHLPGYEQKDINVKAKNGVLMVQAXSAFNHYLKIQNLP 360
+G++EG + I H+P E D+ V + + + S H K N P
Sbjct: 354 KGQLEGIQVVIDPHVPSVESVDMPVSSMDNSTLEVFSSQQQHSFKCNNTP 403
>10_01_0028 -
359988-359996,360228-360332,360415-360536,360676-360763,
360988-361056,361132-361461,361544-361610,361695-361753,
361838-362056,362224-362289,362370-362500,362683-362782,
362864-363001,363111-363218,363627-363723,363806-364257
Length = 719
Score = 27.5 bits (58), Expect = 8.6
Identities = 12/36 (33%), Positives = 17/36 (47%)
Frame = -3
Query: 590 WSNFAQRNATLGQHDEGAVVEVPQHYKQGRVEGDKY 483
W QRNA + DE ++ HY +V+G Y
Sbjct: 139 WPQRYQRNAATRRPDEEEDIKARCHYSSAKVDGTLY 174
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,155,224
Number of Sequences: 37544
Number of extensions: 301327
Number of successful extensions: 880
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 864
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 880
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1423789920
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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