Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0719
         (598 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_27584| Best HMM Match : F5_F8_type_C (HMM E-Value=0)                28   6.6  
SB_6619| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   6.6  
SB_6748| Best HMM Match : Pkinase (HMM E-Value=1.7e-05)                27   8.7  
SB_43390| Best HMM Match : fn3 (HMM E-Value=9.3e-30)                   27   8.7  

>SB_27584| Best HMM Match : F5_F8_type_C (HMM E-Value=0)
          Length = 7381

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 16/70 (22%), Positives = 32/70 (45%), Gaps = 1/70 (1%)
 Frame = +3

Query: 327  VNPAAFGIHIPGKVLYFQVMIKSTXSLHHQH-SIFRFHVDVFLFVTRQVNRYLILVAFHA 503
            ++P  +  HI  +  ++   IK    LH+++ S+      +   +     R+   +AF  
Sbjct: 5830 IHPRGWYRHIAMRAEFYGCQIKFIPHLHNRYLSLPEAKNSLVTLLAESQQRFAADIAFTR 5889

Query: 504  SLFIMLGNFN 533
            S F+  GNF+
Sbjct: 5890 SCFVFQGNFD 5899


>SB_6619| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 942

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 24/71 (33%), Positives = 32/71 (45%)
 Frame = -3

Query: 293 KQKQPEDSKRPVASPLRRPLRM*VVKRWSSPPRATCGTLTSAWRQPRRPMRSRKL*KRPR 114
           K K+ +  K P+ SP  +  R    KR S  P        S  R+  R  RSR + +R R
Sbjct: 292 KSKERKTLKSPIRSPRGQSSRERNTKRKSKSP--------SLERRRSRARRSRSIERRDR 343

Query: 113 TLSTSETMRSS 81
             S S + RSS
Sbjct: 344 RRSRSRSPRSS 354


>SB_6748| Best HMM Match : Pkinase (HMM E-Value=1.7e-05)
          Length = 315

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 16/46 (34%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
 Frame = -3

Query: 491 DKYQISIHLPGYEQKDINVKAKNGVLMVQAXSAFNH-YLKIQNLPW 357
           D Y++  +    EQ+D N   K G   VQ    FN+ Y  I+ L W
Sbjct: 22  DDYEVDENSDDEEQEDPNDYCKGGYHPVQLGDLFNNRYSVIRKLGW 67


>SB_43390| Best HMM Match : fn3 (HMM E-Value=9.3e-30)
          Length = 1043

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 11/36 (30%), Positives = 20/36 (55%)
 Frame = -3

Query: 386 HYLKIQNLPWDVNSEGSWVYEKDVLKITFPLKQKQP 279
           H+L+I  LP +VNS+    ++ D +  + P+    P
Sbjct: 839 HHLRISPLPINVNSQSGSTFQADCIIYSEPVDDSAP 874


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,387,384
Number of Sequences: 59808
Number of extensions: 338845
Number of successful extensions: 1048
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 957
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1046
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1439498375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)