Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0719
         (598 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cycl...    24   0.98 
L01587-1|AAA27734.1|   69|Apis mellifera zinc finger protein pro...    22   5.3  
DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       21   9.2  
AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    21   9.2  

>AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cyclase
           beta-3 protein.
          Length = 832

 Score = 24.2 bits (50), Expect = 0.98
 Identities = 30/99 (30%), Positives = 41/99 (41%)
 Frame = -2

Query: 495 RRQVSDIYSPAWLRTERHQRESEKWSADGAG*XCF*SLLENTEPSLGCEFRRQLGLRERR 316
           RR V++  SP      R  R +   +        F SLL +TE      FR+       R
Sbjct: 685 RRSVAN--SPTKNADSREYRSNSMGAVMTRNSEMFSSLLSDTEQ----HFRQHRDSLSPR 738

Query: 315 VENHLPAEAKAARG*QEASCKPTETTSTNVSREEMEFTT 199
           VEN      ++A    EAS     +TS+  SREE   T+
Sbjct: 739 VEN------RSAIVHSEASANANSSTSSEESREEKATTS 771


>L01587-1|AAA27734.1|   69|Apis mellifera zinc finger protein
           protein.
          Length = 69

 Score = 21.8 bits (44), Expect = 5.3
 Identities = 8/25 (32%), Positives = 13/25 (52%)
 Frame = -3

Query: 92  MRSSXRFHINLIKYKCEN*XIKCKY 18
           + S  + H N+ +Y+C N     KY
Sbjct: 32  LNSHLKSHSNVYQYRCANCTYATKY 56


>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 21.0 bits (42), Expect = 9.2
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = -1

Query: 598 IRFGPTLPNEMQHL 557
           + F  T P+E+QHL
Sbjct: 386 LMFSATFPDEVQHL 399


>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 21.0 bits (42), Expect = 9.2
 Identities = 8/16 (50%), Positives = 12/16 (75%)
 Frame = -2

Query: 342 RQLGLRERRVENHLPA 295
           R++ L ERR ++HL A
Sbjct: 230 RRIVLEERRAQSHLEA 245


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 153,974
Number of Sequences: 438
Number of extensions: 2870
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17482179
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)