Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0718
         (279 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_0895 - 29168107-29168229,29168617-29170068                       27   2.8  
01_06_1478 - 37648781-37649113,37649200-37649455,37649954-376500...    25   8.6  
01_01_0321 - 2584332-2584661,2584776-2584883,2584987-2585070,258...    25   8.6  

>04_04_0895 - 29168107-29168229,29168617-29170068
          Length = 524

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = -1

Query: 240 DGCHRRHPRXYVSEFNISSC 181
           DGC RR+P  Y S+  I +C
Sbjct: 259 DGCIRRYPALYGSDDRIQAC 278


>01_06_1478 -
           37648781-37649113,37649200-37649455,37649954-37650066,
           37650312-37650689,37650822-37650999,37651429-37651565,
           37651993-37652155,37652531-37652688,37652819-37652923,
           37653106-37653253,37653816-37654132
          Length = 761

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 10/22 (45%), Positives = 16/22 (72%)
 Frame = +3

Query: 15  NHSYQFYRNAEVKTXILLNISL 80
           +HS  F+RN+ VK  ++L+ SL
Sbjct: 462 SHSANFWRNSSVKHGVILSKSL 483


>01_01_0321 -
           2584332-2584661,2584776-2584883,2584987-2585070,
           2585162-2585221,2585322-2585421,2585504-2585906,
           2586183-2586480,2587526-2587711
          Length = 522

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = -1

Query: 237 GCHRRHPRXYVSEFNISSCSTC 172
           GCH+R      S F++S  S+C
Sbjct: 267 GCHKRFVEFTKSSFDVSRISSC 288


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,111,094
Number of Sequences: 37544
Number of extensions: 54436
Number of successful extensions: 98
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 98
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 98
length of database: 14,793,348
effective HSP length: 70
effective length of database: 12,165,268
effective search space used: 267635896
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)