Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0718
         (279 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g48190.1 68416.m05257 ataxia-telangiectasia mutated protein (...    25   9.9  
At1g28440.1 68414.m03496 leucine-rich repeat transmembrane prote...    25   9.9  

>At3g48190.1 68416.m05257 ataxia-telangiectasia mutated protein (Atm)
            identical to ataxia-telangiectasia mutated protein (Atm)
            [Arabidopsis thaliana] GI:7529272; contains Pfam profile
            PF00855: PWWP domain; contains GA donor splice site at
            exon 73
          Length = 3255

 Score = 24.6 bits (51), Expect = 9.9
 Identities = 8/26 (30%), Positives = 14/26 (53%)
 Frame = -1

Query: 279  IFLFTQTSHALNTDGCHRRHPRXYVS 202
            +F+F    H   +  CH RH R +++
Sbjct: 2159 VFMFITEMHYRMSAACHHRHTRHHLA 2184


>At1g28440.1 68414.m03496 leucine-rich repeat transmembrane protein
           kinase, putative similar to receptor kinase GI:4105699
           from [Arabidopsis thaliana]
          Length = 996

 Score = 24.6 bits (51), Expect = 9.9
 Identities = 14/45 (31%), Positives = 21/45 (46%), Gaps = 7/45 (15%)
 Frame = -1

Query: 279 IFLFTQTSHALNTDGCHRRH-------PRXYVSEFNISSCSTCKW 166
           +FL   T  +LN DG   +        P  Y+S +N +  S C+W
Sbjct: 6   LFLLFPTVFSLNQDGFILQQVKLSLDDPDSYLSSWNSNDASPCRW 50


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,202,437
Number of Sequences: 28952
Number of extensions: 44996
Number of successful extensions: 56
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 54
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 56
length of database: 12,070,560
effective HSP length: 69
effective length of database: 10,072,872
effective search space used: 231676056
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)