Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0717
         (449 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_04_0319 + 20171486-20171800,20171882-20171956,20172160-201721...    29   2.3  
10_04_0020 + 7644329-7644666,7644960-7645146,7645311-7645365,764...    28   3.0  
01_06_0233 + 27735881-27736238,27736337-27736453,27736559-277367...    28   4.0  
06_02_0074 - 11461300-11461681,11461744-11462009                       27   9.2  
02_04_0206 + 20916063-20919669,20919816-20920014,20920935-209210...    27   9.2  
01_01_0887 + 6978869-6979053,6979183-6979558,6979651-6979734,697...    27   9.2  

>05_04_0319 +
           20171486-20171800,20171882-20171956,20172160-20172195,
           20172302-20172413,20173082-20173152,20173287-20173417,
           20173718-20173783,20174003-20174103,20174311-20174370,
           20174463-20174496,20174852-20174950,20175019-20175078,
           20175700-20175874,20175900-20175950,20176603-20176632
          Length = 471

 Score = 28.7 bits (61), Expect = 2.3
 Identities = 13/29 (44%), Positives = 17/29 (58%)
 Frame = -1

Query: 98  YRYFILNSKKICKSRLYS*IIHLNIFENY 12
           YRYF+L ++KI KS  Y  I     F N+
Sbjct: 346 YRYFVLRAQKIAKSHGYEVINWEETFNNF 374


>10_04_0020 +
           7644329-7644666,7644960-7645146,7645311-7645365,
           7645390-7645438,7645984-7646200
          Length = 281

 Score = 28.3 bits (60), Expect = 3.0
 Identities = 14/38 (36%), Positives = 20/38 (52%)
 Frame = +1

Query: 247 LGRVSRSVRATSMTMENVERLQNNSNXFWLYAKNGRGK 360
           L   +  V  T + +E+  RL+NN N  WL  K  RG+
Sbjct: 189 LNLATYDVFLTPVDVEHYRRLRNNHNWAWLMDKCWRGR 226


>01_06_0233 +
           27735881-27736238,27736337-27736453,27736559-27736713,
           27736796-27736870,27736934-27737242,27737431-27737742,
           27737844-27738218
          Length = 566

 Score = 27.9 bits (59), Expect = 4.0
 Identities = 15/47 (31%), Positives = 21/47 (44%)
 Frame = +3

Query: 123 HYFSILPFTVHGYYGWYDRFSDFGPLWETRXGSDELHRSLWPRSGIK 263
           HYF+++   V   Y   D F D    W  +  +DE  +   PR G K
Sbjct: 236 HYFAVVLLPVEQEY--LDNFKDEQEFWYVKKDADEGEKGDAPRQGDK 280


>06_02_0074 - 11461300-11461681,11461744-11462009
          Length = 215

 Score = 26.6 bits (56), Expect = 9.2
 Identities = 17/44 (38%), Positives = 20/44 (45%)
 Frame = +1

Query: 229 CIEAYGLGRVSRSVRATSMTMENVERLQNNSNXFWLYAKNGRGK 360
           C  A G G   R  RAT +TME   RL+  S         GRG+
Sbjct: 52  CEGARGDGHYERDGRATEVTMEVNRRLRMASKEATRAGWRGRGR 95


>02_04_0206 + 20916063-20919669,20919816-20920014,20920935-20921074,
            20921184-20921263,20922759-20922875,20923089-20923136,
            20923509-20923601,20923881-20923958,20924114-20924218,
            20924543-20925212,20925253-20925350,20925887-20925963,
            20926035-20926117,20926208-20926287,20927060-20927139,
            20927698-20927743,20928709-20929181,20929234-20929579
          Length = 2139

 Score = 26.6 bits (56), Expect = 9.2
 Identities = 19/70 (27%), Positives = 32/70 (45%)
 Frame = +1

Query: 157  DITGGMIDFQILGRCGKQXMXLMNCIEAYGLGRVSRSVRATSMTMENVERLQNNSNXFWL 336
            D+ GG I  +     G   + L+   E    G  S+SVR  S+ ++ + + ++NS    +
Sbjct: 1736 DVNGG-ISKRKDATNGYLKLLLVTAAEGDNAGGTSKSVRDLSLILDALLKTRSNSVLLDI 1794

Query: 337  YAKNGRGKXH 366
              KNG    H
Sbjct: 1795 INKNGLQMLH 1804


>01_01_0887 +
           6978869-6979053,6979183-6979558,6979651-6979734,
           6979838-6979903,6980938-6981007,6981333-6981718,
           6982114-6982154,6982661-6982757
          Length = 434

 Score = 26.6 bits (56), Expect = 9.2
 Identities = 17/43 (39%), Positives = 21/43 (48%), Gaps = 2/43 (4%)
 Frame = +3

Query: 117 HGHYFSI--LPFTVHGYYGWYDRFSDFGPLWETRXGSDELHRS 239
           HGHY S+  LPF  + YY  +    D G L E R   D   R+
Sbjct: 360 HGHYDSVSSLPFEFYHYY--HGSSYDMGTLIEVRRMWDSFIRA 400


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,681,753
Number of Sequences: 37544
Number of extensions: 168892
Number of successful extensions: 310
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 308
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 310
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 871620292
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)