Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0717
         (449 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_8983| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   3.1  
SB_29959| Best HMM Match : GoLoco (HMM E-Value=5.4e-17)                27   7.2  
SB_7282| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   7.2  
SB_29933| Best HMM Match : zf-C2H2 (HMM E-Value=0)                     27   9.5  

>SB_8983| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 606

 Score = 28.3 bits (60), Expect = 3.1
 Identities = 11/36 (30%), Positives = 22/36 (61%)
 Frame = -1

Query: 398 YVLLXISQLSACXLPLPFFAYSQKXFELFCKRSTFS 291
           +VL   + ++ C L  P FAYS+  F ++C  ++++
Sbjct: 548 WVLHIDTSVTGCGLYAPNFAYSENTFGVYCHEASWN 583


>SB_29959| Best HMM Match : GoLoco (HMM E-Value=5.4e-17)
          Length = 774

 Score = 27.1 bits (57), Expect = 7.2
 Identities = 20/59 (33%), Positives = 28/59 (47%), Gaps = 2/59 (3%)
 Frame = +1

Query: 148 PFTDITGGMID--FQILGRCGKQXMXLMNCIEAYGLGRVSRSVRATSMTMENVERLQNN 318
           P   IT  + D  F +L RC    M    C E  G   ++RS R++   +E V RLQ +
Sbjct: 638 PEGKITDSLDDSFFDLLSRCQGSRMDEQRCSEPEGGFDINRS-RSSEDLLEMVARLQGD 695


>SB_7282| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1702

 Score = 27.1 bits (57), Expect = 7.2
 Identities = 15/36 (41%), Positives = 19/36 (52%)
 Frame = -1

Query: 416  AVDSRRYVLLXISQLSACXLPLPFFAYSQKXFELFC 309
            A+DS R+V   I     C  P+P  +Y Q   ELFC
Sbjct: 1023 AIDSHRWVPGLIPGSDYC--PIPAISYPQLENELFC 1056


>SB_29933| Best HMM Match : zf-C2H2 (HMM E-Value=0)
          Length = 420

 Score = 26.6 bits (56), Expect = 9.5
 Identities = 21/62 (33%), Positives = 28/62 (45%), Gaps = 2/62 (3%)
 Frame = +3

Query: 219 SDELHRSLWPRSGIKKCKGYXDDYGECRTLTKQLKRFLAIRKERQ--RQXACGKLTDXKK 392
           S  L R L    G K  K   D  G+C TL +QLK+ L I   ++      CGK    K 
Sbjct: 187 SGNLKRHLMIHKGQKPYK--CDVCGKCFTLKEQLKKHLMIHSGQKPYECDVCGKCFTRKA 244

Query: 393 YV 398
           ++
Sbjct: 245 HL 246


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,548,606
Number of Sequences: 59808
Number of extensions: 204993
Number of successful extensions: 378
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 363
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 378
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 896151577
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)