Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0717
         (449 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CR456904-1|CAG33185.1|  106|Homo sapiens NDUFS5 protein.               33   0.60 
BC093057-1|AAH93057.1|  106|Homo sapiens NADH dehydrogenase (ubi...    33   0.60 
BC001884-1|AAH01884.1|  106|Homo sapiens NADH dehydrogenase (ubi...    33   0.60 
AL606465-3|CAI16711.1|  106|Homo sapiens NADH dehydrogenase (ubi...    33   0.60 
AF020352-1|AAB87866.1|  106|Homo sapiens NADH:ubiquinone oxidore...    33   0.60 
AY367054-1|AAQ72372.1|  280|Homo sapiens actin-filament binding ...    30   4.2  
BC045552-1|AAH45552.1|  471|Homo sapiens FGD4 protein protein.         29   5.5  
AK057294-1|BAB71413.1|  766|Homo sapiens protein ( Homo sapiens ...    29   5.5  

>CR456904-1|CAG33185.1|  106|Homo sapiens NDUFS5 protein.
          Length = 106

 Score = 32.7 bits (71), Expect = 0.60
 Identities = 16/46 (34%), Positives = 24/46 (52%)
 Frame = +3

Query: 261 KKCKGYXDDYGECRTLTKQLKRFLAIRKERQRQXACGKLTDXKKYV 398
           K+CK   DD+ EC    K ++R   IRK+R +    GK T    ++
Sbjct: 54  KECKIEYDDFVECLLRQKTMRRAGTIRKQRDKLIKEGKYTPPPHHI 99


>BC093057-1|AAH93057.1|  106|Homo sapiens NADH dehydrogenase
           (ubiquinone) Fe-S protein 5, 15kDa (NADH-coenzyme Q
           reductas protein.
          Length = 106

 Score = 32.7 bits (71), Expect = 0.60
 Identities = 16/46 (34%), Positives = 24/46 (52%)
 Frame = +3

Query: 261 KKCKGYXDDYGECRTLTKQLKRFLAIRKERQRQXACGKLTDXKKYV 398
           K+CK   DD+ EC    K ++R   IRK+R +    GK T    ++
Sbjct: 54  KECKIEYDDFVECLLRQKTMRRAGTIRKQRDKLIKEGKYTPPPHHI 99


>BC001884-1|AAH01884.1|  106|Homo sapiens NADH dehydrogenase
           (ubiquinone) Fe-S protein 5, 15kDa (NADH-coenzyme Q
           reductas protein.
          Length = 106

 Score = 32.7 bits (71), Expect = 0.60
 Identities = 16/46 (34%), Positives = 24/46 (52%)
 Frame = +3

Query: 261 KKCKGYXDDYGECRTLTKQLKRFLAIRKERQRQXACGKLTDXKKYV 398
           K+CK   DD+ EC    K ++R   IRK+R +    GK T    ++
Sbjct: 54  KECKIEYDDFVECLLRQKTMRRAGTIRKQRDKLIKEGKYTPPPHHI 99


>AL606465-3|CAI16711.1|  106|Homo sapiens NADH dehydrogenase
           (ubiquinone) Fe-S protein 5, 15kDa (NADH-coenzyme Q
           reductas protein.
          Length = 106

 Score = 32.7 bits (71), Expect = 0.60
 Identities = 16/46 (34%), Positives = 24/46 (52%)
 Frame = +3

Query: 261 KKCKGYXDDYGECRTLTKQLKRFLAIRKERQRQXACGKLTDXKKYV 398
           K+CK   DD+ EC    K ++R   IRK+R +    GK T    ++
Sbjct: 54  KECKIEYDDFVECLLRQKTMRRAGTIRKQRDKLIKEGKYTPPPHHI 99


>AF020352-1|AAB87866.1|  106|Homo sapiens NADH:ubiquinone
           oxidoreductase 15 kDa IP subunit protein.
          Length = 106

 Score = 32.7 bits (71), Expect = 0.60
 Identities = 16/46 (34%), Positives = 24/46 (52%)
 Frame = +3

Query: 261 KKCKGYXDDYGECRTLTKQLKRFLAIRKERQRQXACGKLTDXKKYV 398
           K+CK   DD+ EC    K ++R   IRK+R +    GK T    ++
Sbjct: 54  KECKIEYDDFVECLLRQKTMRRAGTIRKQRDKLIKEGKYTPPPHHI 99


>AY367054-1|AAQ72372.1|  280|Homo sapiens actin-filament binding
           protein frabin protein.
          Length = 280

 Score = 29.9 bits (64), Expect = 4.2
 Identities = 16/62 (25%), Positives = 33/62 (53%), Gaps = 2/62 (3%)
 Frame = +3

Query: 201 WETRXGSDELHRSLWPRSGI--KKCKGYXDDYGECRTLTKQLKRFLAIRKERQRQXACGK 374
           WET     ++ + L P   +  +  KG+ +     + +T+++ +F ++ +E Q+Q  CG 
Sbjct: 31  WETTPRIGDILQKLAPFLKMYGEYAKGFDNAMELVKNMTERIPQFKSVVEEIQKQKICGS 90

Query: 375 LT 380
           LT
Sbjct: 91  LT 92


>BC045552-1|AAH45552.1|  471|Homo sapiens FGD4 protein protein.
          Length = 471

 Score = 29.5 bits (63), Expect = 5.5
 Identities = 16/62 (25%), Positives = 33/62 (53%), Gaps = 2/62 (3%)
 Frame = +3

Query: 201 WETRXGSDELHRSLWPRSGI--KKCKGYXDDYGECRTLTKQLKRFLAIRKERQRQXACGK 374
           WET     ++ + L P   +  +  KG+ +     + +T+++ +F ++ +E Q+Q  CG 
Sbjct: 31  WETTPRIGDILQKLAPFLKMYGEYVKGFDNAMELVKNMTERIPQFKSVVEEIQKQKICGS 90

Query: 375 LT 380
           LT
Sbjct: 91  LT 92


>AK057294-1|BAB71413.1|  766|Homo sapiens protein ( Homo sapiens
           cDNA FLJ32732 fis, clone TESTI2001141, highly similar to
           Rattus norvegicus actin-filament binding protein Frabin
           mRNA. ).
          Length = 766

 Score = 29.5 bits (63), Expect = 5.5
 Identities = 16/62 (25%), Positives = 33/62 (53%), Gaps = 2/62 (3%)
 Frame = +3

Query: 201 WETRXGSDELHRSLWPRSGI--KKCKGYXDDYGECRTLTKQLKRFLAIRKERQRQXACGK 374
           WET     ++ + L P   +  +  KG+ +     + +T+++ +F ++ +E Q+Q  CG 
Sbjct: 279 WETTPRIGDILQKLAPFLKMYGEYVKGFDNAMELVKNMTERIPQFKSVVEEIQKQKICGS 338

Query: 375 LT 380
           LT
Sbjct: 339 LT 340


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 52,266,243
Number of Sequences: 237096
Number of extensions: 917485
Number of successful extensions: 1359
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1318
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1359
length of database: 76,859,062
effective HSP length: 84
effective length of database: 56,942,998
effective search space used: 3701294870
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)