Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0715
         (598 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_56046| Best HMM Match : No HMM Matches (HMM E-Value=.)              95   5e-20
SB_1631| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   2.2  
SB_17112| Best HMM Match : Trypsin (HMM E-Value=0)                     29   3.8  
SB_52821| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.0  
SB_5465| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   6.6  

>SB_56046| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 674

 Score = 94.7 bits (225), Expect = 5e-20
 Identities = 56/119 (47%), Positives = 72/119 (60%), Gaps = 2/119 (1%)
 Frame = +2

Query: 158 LRGIDHIKDPRLNKGLAFTLEEPKL*VFTDFWPQ--I*NPGRTVGVLPNFIR*I*RRFE* 331
           +RG D ++D  LNKGLAFTLEE ++       P   I    +   V     R      E 
Sbjct: 60  IRGTDIMRDSHLNKGLAFTLEERQILGIHGLLPPCVISQEIQAQRVYRELQRKP-NDLEK 118

Query: 332 IPYLTELQDRNEKLFFSLLDCDIEKFMPIVYTPTVGLACQKFGLVYRRPRGLYITIHDK 508
              L  L +RNE LFF +L    E+ MPIVYTPTVGLAC+K+G+++RRPRGL+I+IHDK
Sbjct: 119 YIQLMALLERNESLFFRVLFDYTEELMPIVYTPTVGLACRKYGMIFRRPRGLFISIHDK 177



 Score = 33.1 bits (72), Expect = 0.18
 Identities = 14/24 (58%), Positives = 16/24 (66%)
 Frame = +1

Query: 511 HIFDILKNWAEHAVRAIXFTDGER 582
           HI DI+ NW    V+AI  TDGER
Sbjct: 179 HIRDIVSNWPTTEVKAIVMTDGER 202


>SB_1631| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 884

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 10/35 (28%), Positives = 20/35 (57%)
 Frame = +2

Query: 389 DCDIEKFMPIVYTPTVGLACQKFGLVYRRPRGLYI 493
           +CD + F+ + + PTV +   K  ++   P G+Y+
Sbjct: 227 ECDADTFVTVTFRPTVPIVPDKHSVLDHVPVGIYV 261


>SB_17112| Best HMM Match : Trypsin (HMM E-Value=0)
          Length = 636

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 15/42 (35%), Positives = 21/42 (50%), Gaps = 4/42 (9%)
 Frame = +2

Query: 116 NMHEITGNIICPNML----RGIDHIKDPRLNKGLAFTLEEPK 229
           N H   G ++ P  +      +DH+KDP+    LA TL E K
Sbjct: 373 NGHHCGGTLVSPQWVVTAAHCVDHVKDPKNYNELAITLGEHK 414


>SB_52821| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 298

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 23/63 (36%), Positives = 32/63 (50%)
 Frame = -2

Query: 240 NT*SLGSSSVKARPLLSRGSFIWSMPLSMFGQIMLPVISCIFLLWSKYLGCKPFIILRLN 61
           N   LG SSV   P+L R S+++       G I LP+I  +  +    LG +P  ILRL 
Sbjct: 90  NIIGLGDSSVWKVPILGRVSYLF------IGPIFLPLIYPLVAI--NLLGPRPLEILRLL 141

Query: 60  FVL 52
            V+
Sbjct: 142 VVI 144


>SB_5465| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 810

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = +3

Query: 222 SPSFRYSRTFGPKFKTQEEQLE 287
           SP F YS +FGP +++  E LE
Sbjct: 156 SPMFSYSNSFGPLYESPIENLE 177


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,642,132
Number of Sequences: 59808
Number of extensions: 355298
Number of successful extensions: 637
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 614
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 637
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1439498375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)