Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0715
         (598 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL110490-11|CAB54452.1|  620|Caenorhabditis elegans Hypothetical...    93   1e-19
Z74474-2|CAA98955.1|  425|Caenorhabditis elegans Hypothetical pr...    29   3.3  
Z32683-6|CAA83623.1|  728|Caenorhabditis elegans Hypothetical pr...    28   4.4  
AC024845-1|AAF60850.2|  347|Caenorhabditis elegans Hypothetical ...    28   5.8  

>AL110490-11|CAB54452.1|  620|Caenorhabditis elegans Hypothetical
           protein Y48B6A.12 protein.
          Length = 620

 Score = 93.5 bits (222), Expect = 1e-19
 Identities = 53/116 (45%), Positives = 70/116 (60%), Gaps = 1/116 (0%)
 Frame = +2

Query: 161 RGIDHIKDPRLNKGLAFTLEEPK-L*VFTDFWPQI*NPGRTVGVLPNFIR*I*RRFE*IP 337
           RGID +K P LNKG+AF+L E + L V     P      +    +   +R          
Sbjct: 50  RGIDLLKSPGLNKGMAFSLHERQYLGVHGLLPPAFMTEEQQAYRIITKLRQQPDNLAKYI 109

Query: 338 YLTELQDRNEKLFFSLLDCDIEKFMPIVYTPTVGLACQKFGLVYRRPRGLYITIHD 505
            L  LQDRNEKL++ +L  ++++ MPIVYTPTVG ACQ FG +YR P+GLYITI+D
Sbjct: 110 QLDSLQDRNEKLYYRVLCDNVKELMPIVYTPTVGQACQHFGFIYRNPKGLYITIND 165



 Score = 30.7 bits (66), Expect = 0.82
 Identities = 14/23 (60%), Positives = 14/23 (60%)
 Frame = +1

Query: 514 IFDILKNWAEHAVRAIXFTDGER 582
           I  IL NW    VRAI  TDGER
Sbjct: 171 IHQILANWPTENVRAIVITDGER 193


>Z74474-2|CAA98955.1|  425|Caenorhabditis elegans Hypothetical
           protein K10C8.2 protein.
          Length = 425

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 16/46 (34%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
 Frame = -2

Query: 195 LSRGSFIWSMPLSMFGQIMLPVISCIFLLWSKYLG-CKPFIILRLN 61
           LS    +W  PL+  G + + V   I +   +YLG C PF+I R++
Sbjct: 94  LSVQLIVWFYPLAQIG-LTMSVYVTILVSVHRYLGVCHPFLIRRIS 138


>Z32683-6|CAA83623.1|  728|Caenorhabditis elegans Hypothetical
           protein R07E5.8 protein.
          Length = 728

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 15/47 (31%), Positives = 22/47 (46%)
 Frame = +3

Query: 192 LIRA*PSRSKSPSFRYSRTFGPKFKTQEEQLEFCQISFDRYDDDLNR 332
           LI   P + +     Y R+    F      L+F + SFD  D+DLN+
Sbjct: 418 LIALLPHQDEETGVFYLRSVKLPFSDDMRTLKFPKFSFDEEDEDLNK 464


>AC024845-1|AAF60850.2|  347|Caenorhabditis elegans Hypothetical
           protein Y65B4BL.3 protein.
          Length = 347

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 19/73 (26%), Positives = 35/73 (47%), Gaps = 1/73 (1%)
 Frame = -2

Query: 222 SSSVKARP-LLSRGSFIWSMPLSMFGQIMLPVISCIFLLWSKYLGCKPFIILRLNFVLSK 46
           SS+ +  P   S    I++  +S+F  +++ VI   +L W      K F+ L + F+ ++
Sbjct: 162 SSTAQKNPDFFSSAFIIFAFIISIFYALLVGVI--FYLKWRISFAPKNFLHLNILFIFAE 219

Query: 45  INVKNDLKKVFVN 7
            N       VFV+
Sbjct: 220 FNFYQPASLVFVD 232


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,413,268
Number of Sequences: 27780
Number of extensions: 280867
Number of successful extensions: 574
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 554
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 574
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1268802960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)