Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0714
         (449 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF067219-16|AAC17022.1|  531|Caenorhabditis elegans Hypothetical...    37   0.006
Z82059-10|CAB04878.2|  589|Caenorhabditis elegans Hypothetical p...    35   0.024
Z77660-9|CAB01179.1|  602|Caenorhabditis elegans Hypothetical pr...    35   0.031
L14433-2|AAA27978.1|  410|Caenorhabditis elegans Hypothetical pr...    33   0.073
AL032663-3|CAA21761.1|  320|Caenorhabditis elegans Hypothetical ...    33   0.096
Z82059-11|CAC42351.2|  591|Caenorhabditis elegans Hypothetical p...    31   0.39 
AC024810-18|ABC71796.1|  787|Caenorhabditis elegans Abnormal cel...    31   0.51 
AB212859-1|BAE66674.1|  787|Caenorhabditis elegans COGC-1 protein.     31   0.51 
Z79759-4|CAB02139.2|  395|Caenorhabditis elegans Hypothetical pr...    30   0.68 
U67737-1|AAC63596.1|  395|Caenorhabditis elegans MEL-26 protein.       30   0.68 
AF519108-1|AAM74222.1|  909|Caenorhabditis elegans EOR-1 protein.      30   0.89 
AF502568-1|AAM74151.1|  909|Caenorhabditis elegans EOR-1 protein.      30   0.89 
AF100669-8|AAK39268.1|  909|Caenorhabditis elegans Egl-1 suppres...    30   0.89 
U80842-9|AAB37945.2|  258|Caenorhabditis elegans Hypothetical pr...    27   6.3  
AF125969-1|AAD14762.2| 1484|Caenorhabditis elegans Hypothetical ...    27   6.3  
U80441-12|ABE73337.1|  147|Caenorhabditis elegans Hypothetical p...    27   8.3  
U23454-6|AAC46521.1|  192|Caenorhabditis elegans Hypothetical pr...    27   8.3  
AC006830-2|AAK68611.2|  293|Caenorhabditis elegans Serpentine re...    27   8.3  

>AF067219-16|AAC17022.1|  531|Caenorhabditis elegans Hypothetical
           protein R12E2.1 protein.
          Length = 531

 Score = 37.1 bits (82), Expect = 0.006
 Identities = 18/53 (33%), Positives = 29/53 (54%), Gaps = 2/53 (3%)
 Frame = +2

Query: 248 IATHKLVLSVCSPYFQEMF--KMNPTQHPIVFLKDVSHSALRDLLQFMYQGEV 400
           I  H++VLS CSPYF  MF  +M       + ++++    L  L++F Y G +
Sbjct: 67  INAHRVVLSACSPYFLSMFTSQMAECYMREINMEEIEPPTLEALIEFCYTGAI 119


>Z82059-10|CAB04878.2|  589|Caenorhabditis elegans Hypothetical
           protein T27E9.4a protein.
          Length = 589

 Score = 35.1 bits (77), Expect = 0.024
 Identities = 15/53 (28%), Positives = 33/53 (62%), Gaps = 2/53 (3%)
 Frame = +2

Query: 248 IATHKLVLSVCSPYFQEMFKMNPTQHPI--VFLKDVSHSALRDLLQFMYQGEV 400
           ++ HK++L+   PYF+ MF ++  +  +  + ++D+++  +  LL F Y GE+
Sbjct: 62  LSAHKVILAATIPYFRGMFTLDLMEANMKEINIEDMNYETVDALLSFAYTGEL 114


>Z77660-9|CAB01179.1|  602|Caenorhabditis elegans Hypothetical
           protein F38H4.7 protein.
          Length = 602

 Score = 34.7 bits (76), Expect = 0.031
 Identities = 24/61 (39%), Positives = 32/61 (52%), Gaps = 5/61 (8%)
 Frame = +2

Query: 248 IATHKLVLSVCSPYFQEMFK--MNP--TQHPI-VFLKDVSHSALRDLLQFMYQGEVNXKQ 412
           I  HK VLS+ S  F  MF   + P  T+  + + L DV  SA   LL+F+Y  EV  + 
Sbjct: 204 IPAHKFVLSIGSVVFDAMFNGGLTPKNTEEALEIELPDVEPSAFLALLKFLYSDEVKIEA 263

Query: 413 E 415
           E
Sbjct: 264 E 264


>L14433-2|AAA27978.1|  410|Caenorhabditis elegans Hypothetical
           protein C50C3.8 protein.
          Length = 410

 Score = 33.5 bits (73), Expect = 0.073
 Identities = 16/52 (30%), Positives = 28/52 (53%), Gaps = 3/52 (5%)
 Frame = +2

Query: 248 IATHKLVLSVCSPYFQEMFK---MNPTQHPIVFLKDVSHSALRDLLQFMYQG 394
           I  H+ +L   SP F+ MF    M   Q   + ++D  + ++R +++FMY G
Sbjct: 230 IKAHRCILGQNSPVFKSMFSSPNMIEAQKGEIHIEDAKYDSVRAMVEFMYTG 281


>AL032663-3|CAA21761.1|  320|Caenorhabditis elegans Hypothetical
           protein Y75B12B.4 protein.
          Length = 320

 Score = 33.1 bits (72), Expect = 0.096
 Identities = 22/64 (34%), Positives = 30/64 (46%), Gaps = 2/64 (3%)
 Frame = +2

Query: 260 KLVLSVCSPYFQEMFKMNPTQHPIVFLK--DVSHSALRDLLQFMYQGEVNXKQEX*HHLL 433
           K VL+  S +FQ+MF  N  +     +K  DV+HS   DLL  +Y   +        HLL
Sbjct: 175 KQVLATSSQFFQKMFYSNFAEKTQAEIKIDDVTHSEFIDLLNVIYPTHMLINSSNVSHLL 234

Query: 434 VQRD 445
              D
Sbjct: 235 KLSD 238


>Z82059-11|CAC42351.2|  591|Caenorhabditis elegans Hypothetical
           protein T27E9.4b protein.
          Length = 591

 Score = 31.1 bits (67), Expect = 0.39
 Identities = 15/55 (27%), Positives = 31/55 (56%), Gaps = 4/55 (7%)
 Frame = +2

Query: 248 IATHKLVLSVCSPYFQEMFKMNPTQHPIVFL----KDVSHSALRDLLQFMYQGEV 400
           ++ HK++L+   PYF+ MF ++  +  +  +     D+++  +  LL F Y GE+
Sbjct: 62  LSAHKVILAATIPYFRGMFTLDLMEANMKEINIEDSDMNYETVDALLSFAYTGEL 116


>AC024810-18|ABC71796.1|  787|Caenorhabditis elegans Abnormal cell
           migration protein 30 protein.
          Length = 787

 Score = 30.7 bits (66), Expect = 0.51
 Identities = 12/24 (50%), Positives = 14/24 (58%)
 Frame = +2

Query: 230 WLPKXCIATHKLVLSVCSPYFQEM 301
           W+ K C  THKLV  VC  YF  +
Sbjct: 299 WIEKTCAVTHKLVAEVCE-YFDNL 321


>AB212859-1|BAE66674.1|  787|Caenorhabditis elegans COGC-1 protein.
          Length = 787

 Score = 30.7 bits (66), Expect = 0.51
 Identities = 12/24 (50%), Positives = 14/24 (58%)
 Frame = +2

Query: 230 WLPKXCIATHKLVLSVCSPYFQEM 301
           W+ K C  THKLV  VC  YF  +
Sbjct: 299 WIEKTCAVTHKLVAEVCE-YFDNL 321


>Z79759-4|CAB02139.2|  395|Caenorhabditis elegans Hypothetical
           protein ZK858.4 protein.
          Length = 395

 Score = 30.3 bits (65), Expect = 0.68
 Identities = 14/55 (25%), Positives = 28/55 (50%), Gaps = 3/55 (5%)
 Frame = +2

Query: 248 IATHKLVLSVCSPYFQEMFKMNPT---QHPIVFLKDVSHSALRDLLQFMYQGEVN 403
           I  HK VL+  SP F  M     T   +  ++++ D+ +  + +++ ++Y G  N
Sbjct: 212 IRAHKAVLAARSPVFNAMLTHQDTDEAKSSMMYINDMDYDVIYEMVYYIYCGRCN 266


>U67737-1|AAC63596.1|  395|Caenorhabditis elegans MEL-26 protein.
          Length = 395

 Score = 30.3 bits (65), Expect = 0.68
 Identities = 14/55 (25%), Positives = 28/55 (50%), Gaps = 3/55 (5%)
 Frame = +2

Query: 248 IATHKLVLSVCSPYFQEMFKMNPT---QHPIVFLKDVSHSALRDLLQFMYQGEVN 403
           I  HK VL+  SP F  M     T   +  ++++ D+ +  + +++ ++Y G  N
Sbjct: 212 IRAHKAVLAARSPVFNAMLTHQDTDEAKSSMMYINDMDYDVIYEMVYYIYCGRCN 266


>AF519108-1|AAM74222.1|  909|Caenorhabditis elegans EOR-1 protein.
          Length = 909

 Score = 29.9 bits (64), Expect = 0.89
 Identities = 15/50 (30%), Positives = 22/50 (44%)
 Frame = +2

Query: 251 ATHKLVLSVCSPYFQEMFKMNPTQHPIVFLKDVSHSALRDLLQFMYQGEV 400
           A H+ +L+  SPYF  +FK        + +   S       L +MY G V
Sbjct: 54  AAHRNILAAHSPYFDAIFKYCKITKEQLTINSKSPQVFELFLNYMYSGTV 103


>AF502568-1|AAM74151.1|  909|Caenorhabditis elegans EOR-1 protein.
          Length = 909

 Score = 29.9 bits (64), Expect = 0.89
 Identities = 15/50 (30%), Positives = 22/50 (44%)
 Frame = +2

Query: 251 ATHKLVLSVCSPYFQEMFKMNPTQHPIVFLKDVSHSALRDLLQFMYQGEV 400
           A H+ +L+  SPYF  +FK        + +   S       L +MY G V
Sbjct: 54  AAHRNILAAHSPYFDAIFKYCKITKEQLTINSKSPQVFELFLNYMYSGTV 103


>AF100669-8|AAK39268.1|  909|Caenorhabditis elegans Egl-1
           suppressor/dio uptake defective/raf enhancer protein 1
           protein.
          Length = 909

 Score = 29.9 bits (64), Expect = 0.89
 Identities = 15/50 (30%), Positives = 22/50 (44%)
 Frame = +2

Query: 251 ATHKLVLSVCSPYFQEMFKMNPTQHPIVFLKDVSHSALRDLLQFMYQGEV 400
           A H+ +L+  SPYF  +FK        + +   S       L +MY G V
Sbjct: 54  AAHRNILAAHSPYFDAIFKYCKITKEQLTINSKSPQVFELFLNYMYSGTV 103


>U80842-9|AAB37945.2|  258|Caenorhabditis elegans Hypothetical
           protein ZC239.6 protein.
          Length = 258

 Score = 27.1 bits (57), Expect = 6.3
 Identities = 21/63 (33%), Positives = 31/63 (49%), Gaps = 3/63 (4%)
 Frame = +2

Query: 254 THKLVLSVCSPYFQ---EMFKMNPTQHPIVFLKDVSHSALRDLLQFMYQGEVNXKQEX*H 424
           T K  L+    YF+   E+ ++NPT  PI   +   H     +L FM  G+V+  QE  +
Sbjct: 13  TSKATLTKFDGYFKNLPEIQQVNPTS-PIFVDRSPKH--FETILNFMRDGDVDLPQEYLN 69

Query: 425 HLL 433
            LL
Sbjct: 70  QLL 72


>AF125969-1|AAD14762.2| 1484|Caenorhabditis elegans Hypothetical
            protein Y38C9A.1 protein.
          Length = 1484

 Score = 27.1 bits (57), Expect = 6.3
 Identities = 13/32 (40%), Positives = 20/32 (62%)
 Frame = -1

Query: 218  TRSPRDSRP*KPADIFAWKLFQHSENCSSDAM 123
            TRSP+  +P KP    ++  FQ+S + SS A+
Sbjct: 1362 TRSPQVQKPIKPTASRSFTSFQNSPSTSSSAL 1393


>U80441-12|ABE73337.1|  147|Caenorhabditis elegans Hypothetical
           protein F27C1.13 protein.
          Length = 147

 Score = 26.6 bits (56), Expect = 8.3
 Identities = 18/35 (51%), Positives = 21/35 (60%), Gaps = 2/35 (5%)
 Frame = +3

Query: 129 VGRTIFTMLEQFPR--KYVSGLSWPAVAWRSRRRN 227
           +GRTI T L+QF    KYV+  S P  A  S RRN
Sbjct: 95  MGRTIITSLDQFQHLGKYVASSSNPPKA--SLRRN 127


>U23454-6|AAC46521.1|  192|Caenorhabditis elegans Hypothetical
           protein C10A4.7 protein.
          Length = 192

 Score = 26.6 bits (56), Expect = 8.3
 Identities = 11/28 (39%), Positives = 18/28 (64%)
 Frame = +1

Query: 148 LCWNNFHANMSAGFHGLLSRGDLVDVTL 231
           LCW + +AN++A F  LL+ G +   T+
Sbjct: 129 LCWEDENANVAAAFILLLASGTITFFTM 156


>AC006830-2|AAK68611.2|  293|Caenorhabditis elegans Serpentine
           receptor, class sx protein40 protein.
          Length = 293

 Score = 26.6 bits (56), Expect = 8.3
 Identities = 9/21 (42%), Positives = 15/21 (71%)
 Frame = -3

Query: 267 TNLCVAIHXFGSQRYVYEIST 205
           +N+CV  + FG   Y+Y++ST
Sbjct: 154 SNICVLSNCFGDAYYLYKVST 174


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,069,876
Number of Sequences: 27780
Number of extensions: 201703
Number of successful extensions: 386
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 380
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 384
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 788595652
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)