Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0713
         (289 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_0112 - 860330-861946                                             25   9.8  
05_01_0061 - 422914-423027,423114-423149,423250-423324,423412-42...    25   9.8  
01_05_0621 + 23756682-23757075,23757530-23757726,23757825-23758139     25   9.8  

>12_01_0112 - 860330-861946
          Length = 538

 Score = 25.0 bits (52), Expect = 9.8
 Identities = 13/25 (52%), Positives = 16/25 (64%)
 Frame = -2

Query: 153 LCHLLHLAVTTILVVTSAKTVEFLE 79
           LC LLH+A+T   +  SAKT   LE
Sbjct: 222 LCRLLHVAIT---ICASAKTCRDLE 243


>05_01_0061 -
           422914-423027,423114-423149,423250-423324,423412-423465,
           423554-423620,423912-424025,424114-424215,424220-424269,
           424380-424424,424559-424642,424996-425100,425300-425443,
           425535-425643,425738-425766
          Length = 375

 Score = 25.0 bits (52), Expect = 9.8
 Identities = 7/11 (63%), Positives = 10/11 (90%)
 Frame = -3

Query: 197 SWQGIRTRCRK 165
           +W+G+R RCRK
Sbjct: 335 AWEGVRARCRK 345


>01_05_0621 + 23756682-23757075,23757530-23757726,23757825-23758139
          Length = 301

 Score = 25.0 bits (52), Expect = 9.8
 Identities = 8/13 (61%), Positives = 9/13 (69%)
 Frame = +1

Query: 94  SFCGRYDENSRNC 132
           S+CG Y  NSR C
Sbjct: 6   SYCGNYGHNSRTC 18


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,337,960
Number of Sequences: 37544
Number of extensions: 53907
Number of successful extensions: 115
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 115
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 115
length of database: 14,793,348
effective HSP length: 70
effective length of database: 12,165,268
effective search space used: 304131700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)