Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0713
         (289 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z78539-5|CAB01733.2| 1272|Caenorhabditis elegans Hypothetical pr...    27   2.9  
AJ131742-1|CAA10498.1|  590|Caenorhabditis elegans protein ( Cae...    27   2.9  
AF098989-4|AAK18956.2|  590|Caenorhabditis elegans Dystrobrevin ...    27   2.9  

>Z78539-5|CAB01733.2| 1272|Caenorhabditis elegans Hypothetical
           protein C31E10.8 protein.
          Length = 1272

 Score = 26.6 bits (56), Expect = 2.9
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = +1

Query: 91  HSFCGRYDENSRNCEMKQMTQRKL 162
           H+FC RY E  R  + + MT RK+
Sbjct: 34  HTFCNRYSEAERT-KYQMMTHRKI 56


>AJ131742-1|CAA10498.1|  590|Caenorhabditis elegans protein (
           Caenorhabditis elegansmRNA for dystrobrevin. ).
          Length = 590

 Score = 26.6 bits (56), Expect = 2.9
 Identities = 11/25 (44%), Positives = 17/25 (68%), Gaps = 2/25 (8%)
 Frame = -3

Query: 206 QLRSWQGIRTRCRKCS--FLCVICF 138
           Q+RS+ G R +C++C+   LC  CF
Sbjct: 268 QVRSFTGFRYKCQRCANYQLCQSCF 292


>AF098989-4|AAK18956.2|  590|Caenorhabditis elegans Dystrobrevin
           homolog protein 1 protein.
          Length = 590

 Score = 26.6 bits (56), Expect = 2.9
 Identities = 11/25 (44%), Positives = 17/25 (68%), Gaps = 2/25 (8%)
 Frame = -3

Query: 206 QLRSWQGIRTRCRKCS--FLCVICF 138
           Q+RS+ G R +C++C+   LC  CF
Sbjct: 268 QVRSFTGFRYKCQRCANYQLCQSCF 292


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,941,223
Number of Sequences: 27780
Number of extensions: 53170
Number of successful extensions: 156
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 156
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 156
length of database: 12,740,198
effective HSP length: 70
effective length of database: 10,795,598
effective search space used: 269889950
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)