Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0713
         (289 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    22   1.3  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    22   1.3  
L01587-1|AAA27734.1|   69|Apis mellifera zinc finger protein pro...    21   2.3  
DQ485318-1|ABF21077.1|  223|Apis mellifera icarapin variant 1 pr...    20   5.3  
AY939856-1|AAX33236.1|  223|Apis mellifera venom carbohydrate-ri...    20   5.3  
AY897570-1|AAW81036.1|  223|Apis mellifera venom protein 2 protein.    20   5.3  
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    20   7.0  

>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 22.2 bits (45), Expect = 1.3
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = -3

Query: 176 RCRKCSFLCVICFISQL 126
           R RK  F+ ++CF+S L
Sbjct: 412 RKRKELFIAIVCFVSYL 428


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 22.2 bits (45), Expect = 1.3
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = -3

Query: 176 RCRKCSFLCVICFISQL 126
           R RK  F+ ++CF+S L
Sbjct: 465 RKRKELFIAIVCFVSYL 481


>L01587-1|AAA27734.1|   69|Apis mellifera zinc finger protein
           protein.
          Length = 69

 Score = 21.4 bits (43), Expect = 2.3
 Identities = 6/10 (60%), Positives = 8/10 (80%)
 Frame = -3

Query: 176 RCRKCSFLCV 147
           +C KCS+ CV
Sbjct: 18  KCEKCSYSCV 27


>DQ485318-1|ABF21077.1|  223|Apis mellifera icarapin variant 1
           precursor protein.
          Length = 223

 Score = 20.2 bits (40), Expect = 5.3
 Identities = 7/12 (58%), Positives = 10/12 (83%)
 Frame = +1

Query: 91  HSFCGRYDENSR 126
           HSF G +DE+S+
Sbjct: 18  HSFPGAHDEDSK 29


>AY939856-1|AAX33236.1|  223|Apis mellifera venom carbohydrate-rich
           protein precursor protein.
          Length = 223

 Score = 20.2 bits (40), Expect = 5.3
 Identities = 7/12 (58%), Positives = 10/12 (83%)
 Frame = +1

Query: 91  HSFCGRYDENSR 126
           HSF G +DE+S+
Sbjct: 18  HSFPGAHDEDSK 29


>AY897570-1|AAW81036.1|  223|Apis mellifera venom protein 2 protein.
          Length = 223

 Score = 20.2 bits (40), Expect = 5.3
 Identities = 7/12 (58%), Positives = 10/12 (83%)
 Frame = +1

Query: 91  HSFCGRYDENSR 126
           HSF G +DE+S+
Sbjct: 18  HSFPGAHDEDSK 29


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 19.8 bits (39), Expect = 7.0
 Identities = 10/39 (25%), Positives = 18/39 (46%)
 Frame = -2

Query: 201 TELAGDTDKVQEVQLPLCHLLHLAVTTILVVTSAKTVEF 85
           TE+ GD+D V+  ++        A    ++ TS  +  F
Sbjct: 444 TEIGGDSDLVERYEVRCYPRYDDATNATVIQTSELSATF 482


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 45,266
Number of Sequences: 438
Number of extensions: 684
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 49
effective length of database: 124,881
effective search space used:  5744526
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)