Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0713
         (289 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g50270.1 68414.m05636 pentatricopeptide (PPR) repeat-containi...    25   6.4  
At3g61480.1 68416.m06885 expressed protein                             25   8.4  

>At1g50270.1 68414.m05636 pentatricopeptide (PPR) repeat-containing
           protein contains INTERPRO:IPR002885 PPR repeats
          Length = 596

 Score = 25.4 bits (53), Expect = 6.4
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = +1

Query: 133 EMKQMTQRKLHFLHLVRIPC 192
           E+K +    LHFLHL +I C
Sbjct: 3   ELKTLLDLPLHFLHLKQIHC 22


>At3g61480.1 68416.m06885 expressed protein
          Length = 1091

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = +1

Query: 88  FHSFCGRYDENSRNCEMKQMTQRKLHFLH 174
           F S+ G+ D+N     + Q++  K HF H
Sbjct: 727 FFSYFGQRDKNEEALLLAQLSAEKPHFSH 755


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,577,492
Number of Sequences: 28952
Number of extensions: 45872
Number of successful extensions: 105
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 105
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 105
length of database: 12,070,560
effective HSP length: 69
effective length of database: 10,072,872
effective search space used: 261894672
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)