Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0712
         (548 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1289.04c |pob1||Boi family protein|Schizosaccharomyces pombe...    27   1.4  
SPBC32C12.03c |ppk25||serine/threonine protein kinase Ppk25 |Sch...    27   2.4  
SPCC1259.08 |||conserved fungal protein|Schizosaccharomyces pomb...    25   5.6  

>SPBC1289.04c |pob1||Boi family protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 871

 Score = 27.5 bits (58), Expect = 1.4
 Identities = 17/58 (29%), Positives = 30/58 (51%), Gaps = 1/58 (1%)
 Frame = +3

Query: 201 QRILPPVASPCCRGSR-PWSSIXSDKDKFQVNLDVQHSPRKKSLLKRRTATSWLKANT 371
           Q ++PP+A+P  R S+   S++  +  +F  N     SP    +LKR + T  +  N+
Sbjct: 396 QYVIPPLATPSSRNSKSTQSAVPENVSRFDSNEPSATSP----ILKRSSPTDSISQNS 449


>SPBC32C12.03c |ppk25||serine/threonine protein kinase Ppk25
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 423

 Score = 26.6 bits (56), Expect = 2.4
 Identities = 16/64 (25%), Positives = 28/64 (43%)
 Frame = +3

Query: 180 CSRPPCEQRILPPVASPCCRGSRPWSSIXSDKDKFQVNLDVQHSPRKKSLLKRRTATSWL 359
           C R P +   +P + S    G   + S  S+     +   +  +PRK+  L++     WL
Sbjct: 246 CGRVPFDDVSVPMLHSKIKSGKLEFPSYISEDCCSLIAAMLNVNPRKRCSLEQAAKFPWL 305

Query: 360 KANT 371
           K N+
Sbjct: 306 KKNS 309


>SPCC1259.08 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 394

 Score = 25.4 bits (53), Expect = 5.6
 Identities = 13/35 (37%), Positives = 18/35 (51%)
 Frame = +3

Query: 330 LKRRTATSWLKANTRRRKISMVTYRVNSLVATLCR 434
           LKR    S+  ANT  RK ++V       +AT C+
Sbjct: 126 LKRPAKVSFALANTPSRKGNLVPQSPRRTIATTCK 160


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,202,342
Number of Sequences: 5004
Number of extensions: 42472
Number of successful extensions: 92
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 90
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 92
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 227943826
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)