Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0708
         (298 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g50270.1 68414.m05636 pentatricopeptide (PPR) repeat-containi...    29   0.74 
At1g22275.1 68414.m02784 expressed protein                             26   5.2  
At3g61480.1 68416.m06885 expressed protein                             25   6.9  

>At1g50270.1 68414.m05636 pentatricopeptide (PPR) repeat-containing
           protein contains INTERPRO:IPR002885 PPR repeats
          Length = 596

 Score = 28.7 bits (61), Expect = 0.74
 Identities = 12/24 (50%), Positives = 16/24 (66%)
 Frame = +1

Query: 190 EMKQMTQRKLHFLHLVRIPCQLVT 261
           E+K +    LHFLHL +I C L+T
Sbjct: 3   ELKTLLDLPLHFLHLKQIHCLLLT 26


>At1g22275.1 68414.m02784 expressed protein
          Length = 856

 Score = 25.8 bits (54), Expect = 5.2
 Identities = 14/59 (23%), Positives = 29/59 (49%)
 Frame = +1

Query: 46  IQDEVRXKGYFILKISNSHKAVLXI*QLVVF*EFHSFCGRYDENSRNCEMKQMTQRKLH 222
           +QD  + KG+F  K + S +A+  + Q +          + +  SR+ E++++   K H
Sbjct: 132 VQDAEKDKGFFETKFNTSSEAINSLNQQMRDMSLRLDAAKEEITSRDKELEELKLEKQH 190


>At3g61480.1 68416.m06885 expressed protein
          Length = 1091

 Score = 25.4 bits (53), Expect = 6.9
 Identities = 13/41 (31%), Positives = 20/41 (48%)
 Frame = +1

Query: 145 FHSFCGRYDENSRNCEMKQMTQRKLHFLHLVRIPCQLVTDA 267
           F S+ G+ D+N     + Q++  K HF H +      V DA
Sbjct: 727 FFSYFGQRDKNEEALLLAQLSAEKPHFSHCLEWLLFTVFDA 767


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,284,338
Number of Sequences: 28952
Number of extensions: 56378
Number of successful extensions: 115
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 115
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 115
length of database: 12,070,560
effective HSP length: 70
effective length of database: 10,043,920
effective search space used: 281229760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)