Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0707
         (499 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23A1.10 |ef1a-b||translation elongation factor EF-1 alpha Ef...    30   0.17 
SPCC794.09c |ef1a-a||translation elongation factor EF-1 alpha Ef...    30   0.17 
SPBC839.15c |ef1a-c||translation elongation factor EF-1 alpha Ef...    30   0.17 
SPBC27B12.11c |||transcription factor |Schizosaccharomyces pombe...    26   2.7  
SPBC1778.10c |ppk21|SPBC4C3.11|serine/threonine protein kinase P...    25   8.4  
SPAC1786.03 |cut11|SPAC24C9.01|integral membrane nucleoporin|Sch...    25   8.4  
SPAC1565.07c |||TATA binding protein interacting protein |Schizo...    25   8.4  
SPBC15D4.03 |slm9||hira protein Slm9|Schizosaccharomyces pombe|c...    25   8.4  
SPAC32A11.03c |phx1||homeobox transcription factor Phx1|Schizosa...    25   8.4  

>SPAC23A1.10 |ef1a-b||translation elongation factor EF-1 alpha
           Ef1a-b |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 460

 Score = 30.3 bits (65), Expect = 0.17
 Identities = 12/17 (70%), Positives = 14/17 (82%)
 Frame = +1

Query: 448 NNPPKGAADFTAQVIVL 498
           N+PP G A FTAQVI+L
Sbjct: 329 NDPPMGCASFTAQVIIL 345


>SPCC794.09c |ef1a-a||translation elongation factor EF-1 alpha
           Ef1a-a |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 460

 Score = 30.3 bits (65), Expect = 0.17
 Identities = 12/17 (70%), Positives = 14/17 (82%)
 Frame = +1

Query: 448 NNPPKGAADFTAQVIVL 498
           N+PP G A FTAQVI+L
Sbjct: 329 NDPPMGCASFTAQVIIL 345


>SPBC839.15c |ef1a-c||translation elongation factor EF-1 alpha
           Ef1a-c |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 460

 Score = 30.3 bits (65), Expect = 0.17
 Identities = 12/17 (70%), Positives = 14/17 (82%)
 Frame = +1

Query: 448 NNPPKGAADFTAQVIVL 498
           N+PP G A FTAQVI+L
Sbjct: 329 NDPPMGCASFTAQVIIL 345


>SPBC27B12.11c |||transcription factor |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 738

 Score = 26.2 bits (55), Expect = 2.7
 Identities = 14/46 (30%), Positives = 20/46 (43%)
 Frame = +1

Query: 325 DIEPAFFRTPAHRRYAPQTCQYHRGCVHRQRGAQMQLRAF*NNPPK 462
           DI P  +    + +Y P+   Y     H Q GA +Q      +PPK
Sbjct: 193 DINP--YNLSPYSQYGPEGTAYSNAQAHHQDGAPLQRVCSAPDPPK 236


>SPBC1778.10c |ppk21|SPBC4C3.11|serine/threonine protein kinase
           Ppk21|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 550

 Score = 24.6 bits (51), Expect = 8.4
 Identities = 9/23 (39%), Positives = 16/23 (69%)
 Frame = +3

Query: 177 NKIEPRSYSIIPCTKYSSSIFSP 245
           N ++P+S +++P T +  SI SP
Sbjct: 29  NPVKPQSSNVVPGTSHIGSIKSP 51


>SPAC1786.03 |cut11|SPAC24C9.01|integral membrane
           nucleoporin|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 601

 Score = 24.6 bits (51), Expect = 8.4
 Identities = 15/39 (38%), Positives = 22/39 (56%)
 Frame = -1

Query: 286 WADNFTLNKLDAQSGLKMLLEYFVHGIIEYDLGSILLVF 170
           W    T+N L  Q  LK L +Y  +G++  D+ SIL V+
Sbjct: 488 WLFCVTVNSL-TQLVLKSL-KYDTYGVVARDISSILAVY 524


>SPAC1565.07c |||TATA binding protein interacting protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1220

 Score = 24.6 bits (51), Expect = 8.4
 Identities = 11/38 (28%), Positives = 20/38 (52%)
 Frame = +1

Query: 196 HILLFHARNIQAAFLARFEHLICSK*NCRPTSXSHRRA 309
           +++LF+  +  + FL R   ++C K    PT  +  RA
Sbjct: 603 YVILFYEPDFDSIFLRRVLIILCKKLQEEPTRSAAARA 640


>SPBC15D4.03 |slm9||hira protein Slm9|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 807

 Score = 24.6 bits (51), Expect = 8.4
 Identities = 10/17 (58%), Positives = 12/17 (70%)
 Frame = -2

Query: 201 NMISVLFCWFSELRGND 151
           N +S+L C FS L GND
Sbjct: 476 NQLSLLKCTFSNLDGND 492


>SPAC32A11.03c |phx1||homeobox transcription factor
           Phx1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 942

 Score = 24.6 bits (51), Expect = 8.4
 Identities = 17/57 (29%), Positives = 24/57 (42%)
 Frame = +3

Query: 141 IPINHYLGVLKTNKIEPRSYSIIPCTKYSSSIFSPL*ASNLFKVKLSAHLXXSPKST 311
           IPI   L     N + P +  +    KYS+S +S +   N   V   A    SP S+
Sbjct: 311 IPIRQSLSSTYYNSLSPNAVPVSSQRKYSASSYSAI--PNAMSVSNQAFDVESPPSS 365


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,795,574
Number of Sequences: 5004
Number of extensions: 31547
Number of successful extensions: 58
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 57
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 57
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 196153982
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)