Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0707
         (499 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_04_0095 - 19668323-19668496,19668585-19668758                       31   0.68 
08_02_0918 - 22617388-22617693,22617799-22617848,22618538-226188...    29   1.6  
11_06_0489 - 24196037-24196105,24196199-24196279,24196358-241964...    28   4.8  
10_05_0065 + 8736744-8738879                                           27   8.4  

>02_04_0095 - 19668323-19668496,19668585-19668758
          Length = 115

 Score = 30.7 bits (66), Expect = 0.68
 Identities = 24/73 (32%), Positives = 35/73 (47%)
 Frame = +2

Query: 281 GPPXXLTEEHRDRILILNRRFLERRLTDDMLRKRVSITADACTDSAAHKCNYELFKTTHL 460
           G    L+EE R    +  ++ +ER   +   RK     ADA   +AA K +    KT  L
Sbjct: 40  GTGRVLSEEERAAESVYIQK-MEREKLEKERRKADKDKADAAKRAAAAKGDKVKLKTNQL 98

Query: 461 RVLQILQLKSLCL 499
             L +LQL+S+ L
Sbjct: 99  AGLDLLQLRSIWL 111


>08_02_0918 -
           22617388-22617693,22617799-22617848,22618538-22618817,
           22619654-22620340,22622870-22622944,22623150-22623285,
           22624801-22625093,22625776-22626597
          Length = 882

 Score = 29.5 bits (63), Expect = 1.6
 Identities = 20/58 (34%), Positives = 28/58 (48%), Gaps = 3/58 (5%)
 Frame = +2

Query: 332 NRRFLERRLTDDMLRKR--VSITADACTDSAAHKCNYELFKTTHLRVLQI-LQLKSLC 496
           N +FL  +LTDDM  K   V +   AC  +  H   + L K   LR L + L   ++C
Sbjct: 683 NDKFLNAQLTDDMFVKLHVVQLKNIACVRNEMHFMEFVLSKARLLRKLYVRLSFYAIC 740


>11_06_0489 -
           24196037-24196105,24196199-24196279,24196358-24196438,
           24196513-24196614,24196693-24196782,24196865-24196945,
           24197021-24197122,24197198-24197287,24197368-24197448,
           24197524-24197622,24197720-24198055,24198142-24198228,
           24198318-24198413,24198499-24198732,24198792-24199036,
           24199119-24199383
          Length = 712

 Score = 27.9 bits (59), Expect = 4.8
 Identities = 17/55 (30%), Positives = 28/55 (50%), Gaps = 2/55 (3%)
 Frame = -1

Query: 337 PVQYQNPIAVLF--GEXXRWADNFTLNKLDAQSGLKMLLEYFVHGIIEYDLGSIL 179
           P+  + PI +++  GE  +   NF +  LD     K+++E   HGI     GS+L
Sbjct: 78  PLAAKRPINIIWPNGEVRQVLGNFNVKNLDQLKQGKVIVETDEHGIPNDRSGSVL 132


>10_05_0065 + 8736744-8738879
          Length = 711

 Score = 27.1 bits (57), Expect = 8.4
 Identities = 14/36 (38%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
 Frame = +2

Query: 284 PPXXLTEEHRDRILILNRRFLERR-LTDDMLRKRVS 388
           PP    EE R+++L L +RF +R  + D ++ KR S
Sbjct: 296 PPEPRAEELREKLLSLEKRFGDRHGVEDSIVTKRRS 331


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,495,854
Number of Sequences: 37544
Number of extensions: 199654
Number of successful extensions: 339
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 337
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 339
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1047416480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)