Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0707
         (499 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U55372-1|AAA98002.2|  816|Caenorhabditis elegans Hypothetical pr...    28   4.3  
Z81143-5|CAB03518.2|  370|Caenorhabditis elegans Hypothetical pr...    27   7.6  
U53335-2|AAU87823.1|  190|Caenorhabditis elegans Hypothetical pr...    27   7.6  

>U55372-1|AAA98002.2|  816|Caenorhabditis elegans Hypothetical
           protein C02G6.2 protein.
          Length = 816

 Score = 27.9 bits (59), Expect = 4.3
 Identities = 19/50 (38%), Positives = 24/50 (48%), Gaps = 3/50 (6%)
 Frame = -1

Query: 340 TPVQYQNPIAVLFGEXXRWADNFTLNKLD---AQSGLKMLLEYFVHGIIE 200
           TP+  QNPI  L      W  N TL +     A +GLK  LE   +G+ E
Sbjct: 546 TPIVAQNPIMSLISSLWLWCLNDTLTEETYNAAIAGLKFQLESGHNGVHE 595


>Z81143-5|CAB03518.2|  370|Caenorhabditis elegans Hypothetical
           protein ZK265.7 protein.
          Length = 370

 Score = 27.1 bits (57), Expect = 7.6
 Identities = 12/28 (42%), Positives = 18/28 (64%)
 Frame = +2

Query: 302 EEHRDRILILNRRFLERRLTDDMLRKRV 385
           EE R+R  +  RR  ERRL +D + +R+
Sbjct: 294 EEERERYRMERRRAEERRLQEDTILRRI 321


>U53335-2|AAU87823.1|  190|Caenorhabditis elegans Hypothetical
           protein C55C3.7 protein.
          Length = 190

 Score = 27.1 bits (57), Expect = 7.6
 Identities = 12/21 (57%), Positives = 13/21 (61%)
 Frame = -3

Query: 458 GGLF*KARSCICAPRCRCTHP 396
           G LF + R CI AP C CT P
Sbjct: 7   GTLF-QTRDCISAPVCNCTGP 26


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,164,677
Number of Sequences: 27780
Number of extensions: 186079
Number of successful extensions: 364
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 349
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 364
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 945973702
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)