Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0707
         (499 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1al...    39   3e-05
X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alp...    36   3e-04
EF013227-1|ABK54581.1|  119|Apis mellifera elongation factor 1-a...    36   3e-04
Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1 p...    21   7.1  
AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase pro...    21   7.1  
AB208108-1|BAE72140.1|   92|Apis mellifera Broad complex zinc fi...    21   9.4  

>AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1alpha
           F2 protein.
          Length = 461

 Score = 39.1 bits (87), Expect = 3e-05
 Identities = 17/17 (100%), Positives = 17/17 (100%)
 Frame = +1

Query: 448 NNPPKGAADFTAQVIVL 498
           NNPPKGAADFTAQVIVL
Sbjct: 331 NNPPKGAADFTAQVIVL 347


>X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alpha
           protein.
          Length = 461

 Score = 35.5 bits (78), Expect = 3e-04
 Identities = 15/17 (88%), Positives = 16/17 (94%)
 Frame = +1

Query: 448 NNPPKGAADFTAQVIVL 498
           N PP+GAADFTAQVIVL
Sbjct: 331 NQPPRGAADFTAQVIVL 347


>EF013227-1|ABK54581.1|  119|Apis mellifera elongation factor
           1-alpha protein.
          Length = 119

 Score = 35.5 bits (78), Expect = 3e-04
 Identities = 15/17 (88%), Positives = 16/17 (94%)
 Frame = +1

Query: 448 NNPPKGAADFTAQVIVL 498
           N PP+GAADFTAQVIVL
Sbjct: 42  NQPPRGAADFTAQVIVL 58


>Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1
           protein.
          Length = 402

 Score = 21.0 bits (42), Expect = 7.1
 Identities = 11/38 (28%), Positives = 19/38 (50%)
 Frame = +3

Query: 135 PVIPINHYLGVLKTNKIEPRSYSIIPCTKYSSSIFSPL 248
           P   +N      KT  I  R++ ++    YS+S F+P+
Sbjct: 287 PFFCVNIVTSYCKTC-ISGRAFQVLTWLGYSNSAFNPI 323


>AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase
           protein.
          Length = 588

 Score = 21.0 bits (42), Expect = 7.1
 Identities = 8/23 (34%), Positives = 12/23 (52%)
 Frame = -1

Query: 304 FGEXXRWADNFTLNKLDAQSGLK 236
           +GE     DN T+ K D + G +
Sbjct: 391 YGEEIGMVDNTTIYKYDVRDGCR 413


>AB208108-1|BAE72140.1|   92|Apis mellifera Broad complex zinc
           finger domain-Z3 isoform protein.
          Length = 92

 Score = 20.6 bits (41), Expect = 9.4
 Identities = 8/29 (27%), Positives = 16/29 (55%)
 Frame = -1

Query: 118 TLEXKFLDRRKTXXSESICQRCFHQSRTK 32
           +L+  F D+ +   +  +C+ C  + RTK
Sbjct: 20  SLKRHFQDKHEQSDTLYVCEFCNRRYRTK 48


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 121,576
Number of Sequences: 438
Number of extensions: 2710
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 13618701
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)