Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0707
         (499 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g60390.1 68418.m07574 elongation factor 1-alpha / EF-1-alpha ...    27   5.3  
At1g11040.1 68414.m01265 DNAJ chaperone C-terminal domain-contai...    27   5.3  
At1g07940.1 68414.m00863 elongation factor 1-alpha / EF-1-alpha ...    27   5.3  
At1g07930.1 68414.m00862 elongation factor 1-alpha / EF-1-alpha ...    27   5.3  
At1g07920.1 68414.m00861 elongation factor 1-alpha / EF-1-alpha ...    27   5.3  
At3g45780.1 68416.m04953 protein kinase / nonphototropic hypocot...    27   9.3  
At1g19110.1 68414.m02377 inter-alpha-trypsin inhibitor heavy cha...    27   9.3  

>At5g60390.1 68418.m07574 elongation factor 1-alpha / EF-1-alpha
           identical to SWISS-PROT:P13905 elongation factor 1-alpha
           (EF-1-alpha) [Arabidopsis thaliana]
          Length = 449

 Score = 27.5 bits (58), Expect = 5.3
 Identities = 10/17 (58%), Positives = 16/17 (94%)
 Frame = +1

Query: 448 NNPPKGAADFTAQVIVL 498
           ++P KGAA+FT+QVI++
Sbjct: 319 DDPAKGAANFTSQVIIM 335


>At1g11040.1 68414.m01265 DNAJ chaperone C-terminal
           domain-containing protein contains Pfam profile PF01556:
           DnaJ C terminal region
          Length = 438

 Score = 27.5 bits (58), Expect = 5.3
 Identities = 15/57 (26%), Positives = 26/57 (45%), Gaps = 2/57 (3%)
 Frame = +2

Query: 299 TEEHRDRILILNRRFLERRLT--DDMLRKRVSITADACTDSAAHKCNYELFKTTHLR 463
           +E H D    ++RR+LE +    DD++  R  +   +  DS+  K    L   +  R
Sbjct: 38  SESHSDADSAIHRRYLEEKFAEEDDLIAARRGLRLQSMDDSSVFKRRSSLLSNSSSR 94


>At1g07940.1 68414.m00863 elongation factor 1-alpha / EF-1-alpha
           identical to GB:CAA34456 from [Arabidopsis thaliana]
           (Plant Mol. Biol. 14 (1), 107-110 (1990))
          Length = 449

 Score = 27.5 bits (58), Expect = 5.3
 Identities = 10/17 (58%), Positives = 16/17 (94%)
 Frame = +1

Query: 448 NNPPKGAADFTAQVIVL 498
           ++P KGAA+FT+QVI++
Sbjct: 319 DDPAKGAANFTSQVIIM 335


>At1g07930.1 68414.m00862 elongation factor 1-alpha / EF-1-alpha
           identical to GB:CAA34456 from [Arabidopsis thaliana]
           (Plant Mol. Biol. 14 (1), 107-110 (1990))
          Length = 449

 Score = 27.5 bits (58), Expect = 5.3
 Identities = 10/17 (58%), Positives = 16/17 (94%)
 Frame = +1

Query: 448 NNPPKGAADFTAQVIVL 498
           ++P KGAA+FT+QVI++
Sbjct: 319 DDPAKGAANFTSQVIIM 335


>At1g07920.1 68414.m00861 elongation factor 1-alpha / EF-1-alpha
           identical to GB:CAA34456 from [Arabidopsis thaliana]
           (Plant Mol. Biol. 14 (1), 107-110 (1990))
          Length = 449

 Score = 27.5 bits (58), Expect = 5.3
 Identities = 10/17 (58%), Positives = 16/17 (94%)
 Frame = +1

Query: 448 NNPPKGAADFTAQVIVL 498
           ++P KGAA+FT+QVI++
Sbjct: 319 DDPAKGAANFTSQVIIM 335


>At3g45780.1 68416.m04953 protein kinase / nonphototropic hypocotyl
           protein 1 (NPH1) / phototropin identical to SP|O48963
           Nonphototropic hypocotyl protein 1 (EC 2.7.1.37)
           (Phototropin) {Arabidopsis thaliana}, cDNA
           nonphototropic hypocotyl 1 (NPH1) GI:2832240; contains
           Pfam profiles PF00069:Protein kinase domain and
           PF00785:PAC motif
          Length = 996

 Score = 26.6 bits (56), Expect = 9.3
 Identities = 17/47 (36%), Positives = 22/47 (46%)
 Frame = +2

Query: 296 LTEEHRDRILILNRRFLERRLTDDMLRKRVSITADACTDSAAHKCNY 436
           LTE  R+ IL  N RFL+   TD    K++    D  T+      NY
Sbjct: 499 LTEYSREEILGRNCRFLQGPETDLTTVKKIRNAIDNQTEVTVQLINY 545


>At1g19110.1 68414.m02377 inter-alpha-trypsin inhibitor heavy
           chain-related similar to SP|Q61704 Inter-alpha-trypsin
           inhibitor heavy chain H3 precursor {Mus musculus};
           contains Pfam profile PF00092: von Willebrand factor
           type A domain
          Length = 754

 Score = 26.6 bits (56), Expect = 9.3
 Identities = 11/41 (26%), Positives = 22/41 (53%)
 Frame = -1

Query: 127 RIATLEXKFLDRRKTXXSESICQRCFHQSRTKVRGSKAIRY 5
           +I+  E  +L       +E +C+ C HQ + K+R +  +R+
Sbjct: 225 KISKREKIYLSVNAGTGTEVLCKGCSHQLKEKLRSAGKLRF 265


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,311,082
Number of Sequences: 28952
Number of extensions: 162362
Number of successful extensions: 256
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 256
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 256
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 878448512
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)