Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= tesS0706
(598 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1142.02c ||SPAC17G6.19c|TPR repeat protein|Schizosaccharomyc... 34 0.018
SPBC17A3.05c |||DNAJ/DUF1977 DNAJB12 homolog|Schizosaccharomyces... 33 0.024
SPBC543.02c |||DNAJ/TPR domain protein DNAJC7 family|Schizosacch... 33 0.032
SPAC23H4.14 |vam6|vps39|guanyl-nucleotide exchange factor Vma6|S... 29 0.52
SPCC645.14c |sti1||chaperone activator Sti1 |Schizosaccharomyces... 28 1.2
SPAC20H4.10 |ufd2||ubiquitin-protein ligase E4 |Schizosaccharomy... 27 2.7
SPBC119.07 |ppk19||serine/threonine protein kinase Ppk19|Schizos... 26 3.6
SPBC646.05c |erg9||squalene synthase Erg9|Schizosaccharomyces po... 26 4.8
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual 25 8.4
SPBC31E1.04 |pep12||SNARE Pep12|Schizosaccharomyces pombe|chr 2|... 25 8.4
>SPAC1142.02c ||SPAC17G6.19c|TPR repeat protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 317
Score = 33.9 bits (74), Expect = 0.018
Identities = 19/46 (41%), Positives = 28/46 (60%)
Frame = +1
Query: 301 EENTTKVSESAIERAMKLKGAGNRAFHAGEYDKAIALYNEALKHAP 438
E++T V++ E A KLK GN A A +Y KA+ LY +A++ P
Sbjct: 72 EDSTAHVNK---EEAEKLKLEGNNAIAAKDYQKALDLYTKAIEIDP 114
>SPBC17A3.05c |||DNAJ/DUF1977 DNAJB12 homolog|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 403
Score = 33.5 bits (73), Expect = 0.024
Identities = 16/38 (42%), Positives = 25/38 (65%), Gaps = 1/38 (2%)
Frame = +1
Query: 325 ESAIERAMKLKGAGNRAFHAGEYDKAIALYNEALK-HA 435
ES+ E A++ G + +AGEYDKA+ N++L+ HA
Sbjct: 2 ESSREEALRCIGLARKYLNAGEYDKALKFANKSLRIHA 39
>SPBC543.02c |||DNAJ/TPR domain protein DNAJC7
family|Schizosaccharomyces pombe|chr 2|||Manual
Length = 476
Score = 33.1 bits (72), Expect = 0.032
Identities = 23/88 (26%), Positives = 37/88 (42%), Gaps = 1/88 (1%)
Frame = +1
Query: 292 LDNEENTTKVSESAIERAMKLKGAGNRAFHAGEYDKAIALYNEALKHAPQTVLSIL-LHF 468
LD + T K + + K GN F G Y A Y+EAL+ P ++ L+
Sbjct: 206 LDPDCTTAKTLFKQVRKLENTKNQGNDLFRQGNYQDAYEKYSEALQIDPDNKETVAKLYM 265
Query: 469 TKTALLVMKTRMWDKLRRLHFALKLNES 552
+ +L+ R + L AL ++ S
Sbjct: 266 NRATVLLRLKRPEEALSDSDNALAIDSS 293
>SPAC23H4.14 |vam6|vps39|guanyl-nucleotide exchange factor
Vma6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 905
Score = 29.1 bits (62), Expect = 0.52
Identities = 12/29 (41%), Positives = 21/29 (72%)
Frame = +1
Query: 370 RAFHAGEYDKAIALYNEALKHAPQTVLSI 456
R+F +G+YD A+ L++E + +P TVL +
Sbjct: 354 RSFSSGDYDLAMRLFSE-ISESPSTVLGL 381
>SPCC645.14c |sti1||chaperone activator Sti1 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 591
Score = 27.9 bits (59), Expect = 1.2
Identities = 12/34 (35%), Positives = 19/34 (55%)
Frame = +1
Query: 337 ERAMKLKGAGNRAFHAGEYDKAIALYNEALKHAP 438
++A + + GN F +G++ AI Y E K AP
Sbjct: 397 DKAEESRVKGNELFKSGDFANAIKEYTEMTKRAP 430
>SPAC20H4.10 |ufd2||ubiquitin-protein ligase E4 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1010
Score = 26.6 bits (56), Expect = 2.7
Identities = 11/25 (44%), Positives = 17/25 (68%)
Frame = -3
Query: 521 LLNLSHILVFITSRAVLVKCSKIDR 447
+LN SH+L ++ + + CSKIDR
Sbjct: 385 MLNFSHVLSRLSEPFLDIGCSKIDR 409
>SPBC119.07 |ppk19||serine/threonine protein kinase
Ppk19|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1706
Score = 26.2 bits (55), Expect = 3.6
Identities = 16/41 (39%), Positives = 25/41 (60%), Gaps = 2/41 (4%)
Frame = -3
Query: 575 RSTQNALQ-LSLSF-KAKCNLLNLSHILVFITSRAVLVKCS 459
RS NAL L + F KAK N L LSH++ ++ +++C+
Sbjct: 610 RSLLNALAPLCVFFGKAKSNDLILSHLITYLNDTDWMLRCA 650
>SPBC646.05c |erg9||squalene synthase Erg9|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 460
Score = 25.8 bits (54), Expect = 4.8
Identities = 12/41 (29%), Positives = 23/41 (56%)
Frame = +2
Query: 197 IAIGLGYLYLRNRLEDPEKRKHQNLKQKRXYLWIMKKTLLR 319
+ IGL L+ +++LEDP+ Q + L++ K ++R
Sbjct: 183 VGIGLSRLFAQSKLEDPDLAHSQAISNSLG-LFLQKVNIIR 222
>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
Length = 4717
Score = 25.0 bits (52), Expect = 8.4
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = +1
Query: 424 LKHAPQTVLSILLHFTKTALLVMKTR 501
++HAP VLS+LL + LV+ +R
Sbjct: 228 IEHAPSEVLSVLLPLLEKRQLVIPSR 253
>SPBC31E1.04 |pep12||SNARE Pep12|Schizosaccharomyces pombe|chr
2|||Manual
Length = 317
Score = 25.0 bits (52), Expect = 8.4
Identities = 14/33 (42%), Positives = 19/33 (57%)
Frame = +3
Query: 66 LTKLFTNKHSI*XLLKPSDNLRIWLLPVVHHFR 164
LTK F N+ + L S + R+W LP VH F+
Sbjct: 272 LTKHFRNRVLV--SLYVSCSSRVWSLPYVHAFK 302
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,256,023
Number of Sequences: 5004
Number of extensions: 43820
Number of successful extensions: 127
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 122
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 127
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 260219058
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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