Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0706
         (598 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_51830| Best HMM Match : No HMM Matches (HMM E-Value=.)              44   9e-05
SB_6453| Best HMM Match : No HMM Matches (HMM E-Value=.)               37   0.011
SB_44774| Best HMM Match : TPR_2 (HMM E-Value=6.3e-15)                 35   0.057
SB_22290| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.23 
SB_22714| Best HMM Match : TPR_2 (HMM E-Value=1.2e-17)                 32   0.40 
SB_59454| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.53 
SB_42340| Best HMM Match : DnaJ (HMM E-Value=3.2e-32)                  31   0.53 
SB_8404| Best HMM Match : TPR_1 (HMM E-Value=0)                        30   1.6  
SB_34109| Best HMM Match : TPR_2 (HMM E-Value=4.8e-30)                 29   2.2  
SB_19540| Best HMM Match : Pro_isomerase (HMM E-Value=1.5e-23)         28   5.0  
SB_13361| Best HMM Match : TPR_2 (HMM E-Value=0.0021)                  28   6.6  
SB_51002| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.7  
SB_51517| Best HMM Match : RVT_1 (HMM E-Value=0.0053)                  27   8.7  

>SB_51830| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 582

 Score = 44.0 bits (99), Expect = 9e-05
 Identities = 18/33 (54%), Positives = 24/33 (72%)
 Frame = +3

Query: 405 CFIQ*SIEACPPDRPVDLATFYQNRSACYENEN 503
           C+ + +IE CPP+   DL+TFYQNR+A YE  N
Sbjct: 163 CYTE-AIELCPPENKQDLSTFYQNRAAAYEQMN 194



 Score = 34.3 bits (75), Expect = 0.076
 Identities = 20/62 (32%), Positives = 32/62 (51%)
 Frame = +1

Query: 253 EKASELKAKTTXSLDNEENTTKVSESAIERAMKLKGAGNRAFHAGEYDKAIALYNEALKH 432
           EK +  + K      +E  TT ++ S   +  KLKG  N+ F   +Y++AI  Y EA++ 
Sbjct: 113 EKGNHEEKKAEDDGASEAKTTNMTPSEQAQVAKLKG--NKYFKGCKYEQAIKCYTEAIEL 170

Query: 433 AP 438
            P
Sbjct: 171 CP 172



 Score = 30.7 bits (66), Expect = 0.93
 Identities = 15/43 (34%), Positives = 25/43 (58%), Gaps = 3/43 (6%)
 Frame = +2

Query: 149 STPFPKWQLAILLGAPIA---IGLGYLYLRNRLEDPEKRKHQN 268
           S+   KWQ+A+L+GAP+A   +     Y RN  E  E+ + ++
Sbjct: 69  SSGLEKWQIALLIGAPVAVVCVAGAVWYWRNSQEGEEEGERED 111


>SB_6453| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 784

 Score = 37.1 bits (82), Expect = 0.011
 Identities = 25/72 (34%), Positives = 39/72 (54%), Gaps = 3/72 (4%)
 Frame = +1

Query: 340 RAMKLKGAGNRAFHAGEYDKAIALYNEALKHAPQTVLSILLHFTKTALLVMKT---RMWD 510
           RA+ LK  GN AF   ++  A+ +YNEAL  AP    S +L+  + A  + ++    ++ 
Sbjct: 333 RALHLKTIGNEAFCKQQFLTAVNMYNEALNLAPN---SAVLYANRAAAFIKRSWEGDVYA 389

Query: 511 KLRRLHFALKLN 546
            LR  H AL L+
Sbjct: 390 ALRDCHKALTLD 401


>SB_44774| Best HMM Match : TPR_2 (HMM E-Value=6.3e-15)
          Length = 206

 Score = 34.7 bits (76), Expect = 0.057
 Identities = 16/45 (35%), Positives = 26/45 (57%)
 Frame = +1

Query: 304 ENTTKVSESAIERAMKLKGAGNRAFHAGEYDKAIALYNEALKHAP 438
           EN+ +  +  ++ A   K  GNR +    Y  AIALY++A++ AP
Sbjct: 21  ENSPEEEQDKVKLAEAKKAEGNREYGLKNYVSAIALYSKAIEFAP 65


>SB_22290| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 485

 Score = 32.7 bits (71), Expect = 0.23
 Identities = 15/29 (51%), Positives = 18/29 (62%)
 Frame = +1

Query: 340 RAMKLKGAGNRAFHAGEYDKAIALYNEAL 426
           +A KLK  GN A  AG+  KAI  Y EA+
Sbjct: 8   KAAKLKDQGNAALSAGDTQKAIEFYTEAI 36


>SB_22714| Best HMM Match : TPR_2 (HMM E-Value=1.2e-17)
          Length = 455

 Score = 31.9 bits (69), Expect = 0.40
 Identities = 13/29 (44%), Positives = 21/29 (72%)
 Frame = +1

Query: 343 AMKLKGAGNRAFHAGEYDKAIALYNEALK 429
           A+++K  GN+ F AG+Y+ A++ Y  ALK
Sbjct: 9   AVEIKEEGNKYFKAGDYEAALSSYAAALK 37


>SB_59454| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 285

 Score = 31.5 bits (68), Expect = 0.53
 Identities = 15/29 (51%), Positives = 17/29 (58%)
 Frame = +1

Query: 355 KGAGNRAFHAGEYDKAIALYNEALKHAPQ 441
           K  GN AF  G Y KA  LY EAL+  P+
Sbjct: 37  KQEGNDAFTGGHYQKAYELYTEALEIDPK 65


>SB_42340| Best HMM Match : DnaJ (HMM E-Value=3.2e-32)
          Length = 264

 Score = 31.5 bits (68), Expect = 0.53
 Identities = 15/29 (51%), Positives = 17/29 (58%)
 Frame = +1

Query: 355 KGAGNRAFHAGEYDKAIALYNEALKHAPQ 441
           K  GN AF  G Y KA  LY EAL+  P+
Sbjct: 37  KQEGNDAFTGGHYQKAYELYTEALEIDPK 65


>SB_8404| Best HMM Match : TPR_1 (HMM E-Value=0)
          Length = 1981

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 19/55 (34%), Positives = 31/55 (56%)
 Frame = +1

Query: 274 AKTTXSLDNEENTTKVSESAIERAMKLKGAGNRAFHAGEYDKAIALYNEALKHAP 438
           AK   S +++ + T+ S   +    K K AG+ A   G++ KA+ LY+EA+K  P
Sbjct: 2   AKNLCSDESKVDLTEQSRPGLHE--KAKWAGD-ACSKGDFQKAVELYSEAIKLDP 53


>SB_34109| Best HMM Match : TPR_2 (HMM E-Value=4.8e-30)
          Length = 503

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 11/18 (61%), Positives = 14/18 (77%)
 Frame = +1

Query: 385 GEYDKAIALYNEALKHAP 438
           G Y +A+A YN+ALKH P
Sbjct: 54  GNYKQALACYNQALKHNP 71


>SB_19540| Best HMM Match : Pro_isomerase (HMM E-Value=1.5e-23)
          Length = 741

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 17/46 (36%), Positives = 26/46 (56%)
 Frame = +1

Query: 295 DNEENTTKVSESAIERAMKLKGAGNRAFHAGEYDKAIALYNEALKH 432
           D + + +KV E  +E A KLK  GN  F   +Y+ A   Y +AL++
Sbjct: 285 DADIDFSKV-ELVVEVAEKLKVIGNEQFKQQKYEVAKKKYKKALRY 329


>SB_13361| Best HMM Match : TPR_2 (HMM E-Value=0.0021)
          Length = 304

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 12/35 (34%), Positives = 18/35 (51%)
 Frame = +1

Query: 325 ESAIERAMKLKGAGNRAFHAGEYDKAIALYNEALK 429
           E+ +E A+  K  GN  +    + KAI  Y E +K
Sbjct: 78  ENPVENALSYKEEGNYEYKRKNFKKAIDAYTEGIK 112


>SB_51002| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1888

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 11/28 (39%), Positives = 19/28 (67%)
 Frame = +1

Query: 475  TALLVMKTRMWDKLRRLHFALKLNESCK 558
            T +++ KT   D L++LH+A + +E CK
Sbjct: 1530 TRIIIPKTLQADVLKQLHYAHQGSEKCK 1557


>SB_51517| Best HMM Match : RVT_1 (HMM E-Value=0.0053)
          Length = 346

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 11/28 (39%), Positives = 19/28 (67%)
 Frame = +1

Query: 475 TALLVMKTRMWDKLRRLHFALKLNESCK 558
           T +++ KT   D L++LH+A + +E CK
Sbjct: 300 TRIIIPKTLQADVLKQLHYAHQGSEKCK 327


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,889,955
Number of Sequences: 59808
Number of extensions: 338216
Number of successful extensions: 826
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 743
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 826
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1439498375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)