Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= tesS0706
(598 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF043693-3|AAB97537.1| 207|Caenorhabditis elegans Hypothetical ... 39 0.002
U41007-3|AAA82267.1| 297|Caenorhabditis elegans Hypothetical pr... 36 0.022
AF016422-4|AAG24172.1| 320|Caenorhabditis elegans Hypothetical ... 34 0.088
U41533-7|AAA83170.1| 337|Caenorhabditis elegans Small glutamine... 33 0.20
Z69902-10|CAI59119.1| 4053|Caenorhabditis elegans Hypothetical p... 31 0.47
Z69902-9|CAH10779.1| 4061|Caenorhabditis elegans Hypothetical pr... 31 0.47
Z69902-8|CAA93765.2| 4064|Caenorhabditis elegans Hypothetical pr... 31 0.47
AY551966-1|AAS65430.1| 4064|Caenorhabditis elegans TRR-1 protein. 31 0.47
AC024756-9|AAK29883.4| 430|Caenorhabditis elegans Related to ye... 29 1.9
AF106576-6|AAC78178.1| 381|Caenorhabditis elegans Hypothetical ... 29 3.3
Z69661-2|CAA93494.1| 925|Caenorhabditis elegans Hypothetical pr... 28 5.8
Z35719-6|CAA84795.1| 1253|Caenorhabditis elegans Hypothetical pr... 28 5.8
AF003384-4|AAO21379.1| 339|Caenorhabditis elegans Hypothetical ... 27 7.7
AF003384-3|AAK71373.1| 349|Caenorhabditis elegans Hypothetical ... 27 7.7
>AF043693-3|AAB97537.1| 207|Caenorhabditis elegans Hypothetical
protein C34B2.5 protein.
Length = 207
Score = 39.1 bits (87), Expect = 0.002
Identities = 25/65 (38%), Positives = 34/65 (52%), Gaps = 3/65 (4%)
Frame = +1
Query: 325 ESAIERAMKLKGAGNRAFHAGEYDKAIALYNEALKHAPQT---VLSILLHFTKTALLVMK 495
E I + LK GN F GE++KA Y EA+ P T V SILL + +A ++K
Sbjct: 12 EDQITKVDSLKKEGNNFFANGEFEKANEKYQEAIASCPPTSTEVQSILL--SNSAAALIK 69
Query: 496 TRMWD 510
R W+
Sbjct: 70 LRKWE 74
>U41007-3|AAA82267.1| 297|Caenorhabditis elegans Hypothetical
protein C33H5.8 protein.
Length = 297
Score = 35.9 bits (79), Expect = 0.022
Identities = 14/36 (38%), Positives = 24/36 (66%)
Frame = +1
Query: 343 AMKLKGAGNRAFHAGEYDKAIALYNEALKHAPQTVL 450
A +LK GN AF +Y KA+ +Y+++L+H P ++
Sbjct: 8 AQRLKEQGNEAFKKKKYHKAMTIYSKSLEHWPDPIV 43
>AF016422-4|AAG24172.1| 320|Caenorhabditis elegans Hypothetical
protein R09E12.3 protein.
Length = 320
Score = 33.9 bits (74), Expect = 0.088
Identities = 15/38 (39%), Positives = 21/38 (55%)
Frame = +1
Query: 337 ERAMKLKGAGNRAFHAGEYDKAIALYNEALKHAPQTVL 450
E A + K GN F G+Y A+ YNEA+K P+ +
Sbjct: 138 ELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAI 175
>U41533-7|AAA83170.1| 337|Caenorhabditis elegans Small
glutamine-rich tetratricorepeat protein protein 1
protein.
Length = 337
Score = 32.7 bits (71), Expect = 0.20
Identities = 15/36 (41%), Positives = 22/36 (61%)
Frame = +1
Query: 322 SESAIERAMKLKGAGNRAFHAGEYDKAIALYNEALK 429
S+S I +A KLK GN A +++ A+ YN A+K
Sbjct: 98 SDSDISQANKLKEEGNDLMKASQFEAAVQKYNAAIK 133
>Z69902-10|CAI59119.1| 4053|Caenorhabditis elegans Hypothetical
protein C47D12.1c protein.
Length = 4053
Score = 31.5 bits (68), Expect = 0.47
Identities = 17/50 (34%), Positives = 28/50 (56%), Gaps = 3/50 (6%)
Frame = -1
Query: 460 ARSTGRSGGHASMLHCIKQWL---CHILQHEKPGYQHLLVSWRVLWHFRI 320
A T GH +L +K+ L CH LQH + +Q ++ ++RV +H R+
Sbjct: 2040 ALRTRMEDGHLQILSHVKKILIEECHNLQHVQHVFQMVVRNYRVYYHVRL 2089
>Z69902-9|CAH10779.1| 4061|Caenorhabditis elegans Hypothetical protein
C47D12.1b protein.
Length = 4061
Score = 31.5 bits (68), Expect = 0.47
Identities = 17/50 (34%), Positives = 28/50 (56%), Gaps = 3/50 (6%)
Frame = -1
Query: 460 ARSTGRSGGHASMLHCIKQWL---CHILQHEKPGYQHLLVSWRVLWHFRI 320
A T GH +L +K+ L CH LQH + +Q ++ ++RV +H R+
Sbjct: 2046 ALRTRMEDGHLQILSHVKKILIEECHNLQHVQHVFQMVVRNYRVYYHVRL 2095
>Z69902-8|CAA93765.2| 4064|Caenorhabditis elegans Hypothetical protein
C47D12.1a protein.
Length = 4064
Score = 31.5 bits (68), Expect = 0.47
Identities = 17/50 (34%), Positives = 28/50 (56%), Gaps = 3/50 (6%)
Frame = -1
Query: 460 ARSTGRSGGHASMLHCIKQWL---CHILQHEKPGYQHLLVSWRVLWHFRI 320
A T GH +L +K+ L CH LQH + +Q ++ ++RV +H R+
Sbjct: 2046 ALRTRMEDGHLQILSHVKKILIEECHNLQHVQHVFQMVVRNYRVYYHVRL 2095
>AY551966-1|AAS65430.1| 4064|Caenorhabditis elegans TRR-1 protein.
Length = 4064
Score = 31.5 bits (68), Expect = 0.47
Identities = 17/50 (34%), Positives = 28/50 (56%), Gaps = 3/50 (6%)
Frame = -1
Query: 460 ARSTGRSGGHASMLHCIKQWL---CHILQHEKPGYQHLLVSWRVLWHFRI 320
A T GH +L +K+ L CH LQH + +Q ++ ++RV +H R+
Sbjct: 2046 ALRTRMEDGHLQILSHVKKILIEECHNLQHVQHVFQMVVRNYRVYYHVRL 2095
>AC024756-9|AAK29883.4| 430|Caenorhabditis elegans Related to yeast
vacuolar proteinsorting factor protein 4 protein.
Length = 430
Score = 29.5 bits (63), Expect = 1.9
Identities = 12/38 (31%), Positives = 25/38 (65%)
Frame = +1
Query: 319 VSESAIERAMKLKGAGNRAFHAGEYDKAIALYNEALKH 432
+S A+++A++L AG YD+A+ LY++A+++
Sbjct: 1 MSVPALQKAIELVTKATEEDTAGRYDQALRLYDQAIEY 38
>AF106576-6|AAC78178.1| 381|Caenorhabditis elegans Hypothetical
protein W07E6.3 protein.
Length = 381
Score = 28.7 bits (61), Expect = 3.3
Identities = 17/63 (26%), Positives = 33/63 (52%), Gaps = 2/63 (3%)
Frame = +1
Query: 394 DKAIALYNEALKHAPQTVLSILLHFTKTALLVMKTRM--WDKLRRLHFALKLNESCKAFC 567
+K + ++ ++ A + I++ +ALLVM T W +RR+ F + + S +A C
Sbjct: 140 EKKTSEFSSPIRGAIRIAEYIMMILLISALLVMFTHQHRWIVIRRVFFCIAMAYSFRALC 199
Query: 568 VDL 576
V +
Sbjct: 200 VTI 202
>Z69661-2|CAA93494.1| 925|Caenorhabditis elegans Hypothetical
protein F48F7.4 protein.
Length = 925
Score = 27.9 bits (59), Expect = 5.8
Identities = 15/40 (37%), Positives = 21/40 (52%)
Frame = -3
Query: 518 LNLSHILVFITSRAVLVKCSKIDRTVWGACFNASLYKAMA 399
LNL H TS +L +CSK T + AC ++ L + A
Sbjct: 156 LNLKHFKCLYTSTFLLFRCSKKLYTQYPACNSSFLVRMSA 195
>Z35719-6|CAA84795.1| 1253|Caenorhabditis elegans Hypothetical
protein F17C8.1 protein.
Length = 1253
Score = 27.9 bits (59), Expect = 5.8
Identities = 24/101 (23%), Positives = 46/101 (45%), Gaps = 1/101 (0%)
Frame = -3
Query: 530 KCNLLNLSHILVFITSRAVLVKCSKIDRTVWGACFNASLYKAMALSYSPA*KARLPAPFS 351
+ L+ ++ ++ T L + I + C A ++ A + A R P S
Sbjct: 67 RSGLIYIAVVIAAWTLYLALFDRTFIQHWIVSLCLCAIIFAMFAFTACAAQYQRFYMPTS 126
Query: 350 FMARSMALSDTLVVFSSLSKDXVVFALSSDAFSF-LGLLIY 231
F+ + TL++FS+ ++ + ++S A SF + LLIY
Sbjct: 127 FLCTFLICLVTLLIFSAENQAAFMTPVASLATSFQVVLLIY 167
>AF003384-4|AAO21379.1| 339|Caenorhabditis elegans Hypothetical
protein K07B1.4b protein.
Length = 339
Score = 27.5 bits (58), Expect = 7.7
Identities = 15/43 (34%), Positives = 23/43 (53%)
Frame = -1
Query: 478 RFW*NVARSTGRSGGHASMLHCIKQWLCHILQHEKPGYQHLLV 350
+FW R G G M+ C ++ + H+L+HEK G +LV
Sbjct: 150 QFWTPWRREWGLLHG---MIDCSRESIKHVLEHEKKGKAVVLV 189
>AF003384-3|AAK71373.1| 349|Caenorhabditis elegans Hypothetical
protein K07B1.4a protein.
Length = 349
Score = 27.5 bits (58), Expect = 7.7
Identities = 15/43 (34%), Positives = 23/43 (53%)
Frame = -1
Query: 478 RFW*NVARSTGRSGGHASMLHCIKQWLCHILQHEKPGYQHLLV 350
+FW R G G M+ C ++ + H+L+HEK G +LV
Sbjct: 160 QFWTPWRREWGLLHG---MIDCSRESIKHVLEHEKKGKAVVLV 199
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,617,102
Number of Sequences: 27780
Number of extensions: 251560
Number of successful extensions: 679
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 669
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 679
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1268802960
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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