Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= tesS0704
(598 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_06_0499 + 24354810-24355212,24355677-24355735,24355846-243559... 36 0.019
02_05_0512 + 29675835-29675901,29676681-29676813,29677020-296771... 33 0.13
12_02_0230 + 15973390-15974645,16002878-16003097 31 0.92
05_05_0060 - 22015440-22015481,22015572-22015709,22016704-220167... 30 1.2
02_05_0146 - 26267245-26267339,26267427-26267469,26267589-262677... 30 1.2
12_02_0528 + 20059613-20061472 29 2.8
09_04_0005 + 13612060-13612291,13612381-13612510,13612726-136129... 29 2.8
06_03_0226 - 18420293-18420697 29 2.8
03_02_0982 + 12925861-12926211,12926309-12926378,12927190-129272... 29 3.7
09_04_0508 + 18203079-18203900 28 4.9
04_04_1295 + 32435392-32435480,32435593-32435698 28 4.9
11_04_0423 - 17498569-17498932,17499217-17499992,17503439-17504617 28 6.5
07_03_1616 - 28167872-28168303 28 6.5
04_04_0825 + 28443961-28444099,28444527-28444603,28444710-284447... 28 6.5
03_05_0843 + 28126480-28127007,28127092-28127457,28129388-281294... 28 6.5
12_01_0737 - 6588612-6588922,6595261-6596602,6596639-6596749 27 8.6
10_08_0245 + 16138402-16138548,16138648-16138701,16139106-161391... 27 8.6
07_03_0543 + 19272389-19272534,19273337-19273496,19273584-192737... 27 8.6
04_04_0999 - 30002433-30003279,30003384-30003513,30003620-30003758 27 8.6
04_04_0169 + 23266110-23266439,23267208-23267288,23267399-232675... 27 8.6
>11_06_0499 +
24354810-24355212,24355677-24355735,24355846-24355929,
24356040-24356337,24357026-24357203,24357686-24357746,
24358209-24358391,24358581-24358742,24358844-24359037,
24359354-24359504,24359551-24359578,24359845-24360117,
24360660-24360724
Length = 712
Score = 36.3 bits (80), Expect = 0.019
Identities = 24/48 (50%), Positives = 26/48 (54%), Gaps = 2/48 (4%)
Frame = -1
Query: 340 PWPTPWRRGPRAALSAAGAGWPPSPWCVSSNGPXPVD--PLLARAGVG 203
P PTP RR P AA +AA A PP P+ VSS P P L RA G
Sbjct: 18 PTPTPRRRLPFAA-AAAAAAAPPRPFLVSSPPPPPAPRARLARRAAAG 64
>02_05_0512 +
29675835-29675901,29676681-29676813,29677020-29677164,
29677586-29678407
Length = 388
Score = 33.5 bits (73), Expect = 0.13
Identities = 16/53 (30%), Positives = 19/53 (35%)
Frame = -1
Query: 280 WPPSPWCVSSNGPXPVDPLLARAGVGSSQLQHVAGRAVYGEGLGVFVAWAYHC 122
W PS WC P P RAG+ AG + G+ V W C
Sbjct: 160 WSPSRWCCPRGSRIPRSPWQIRAGIDKQGAAADAGELLSGQVKAVRKPWRSRC 212
>12_02_0230 + 15973390-15974645,16002878-16003097
Length = 491
Score = 30.7 bits (66), Expect = 0.92
Identities = 17/39 (43%), Positives = 21/39 (53%)
Frame = +1
Query: 79 TAWTAGQGGGSFSCSSDMPKRRRLQDLHHKLRVRRHVEA 195
TA+T G G SC S+ P++ L L H R RR EA
Sbjct: 414 TAFTTS-GNGDLSCPSNFPRKEAL--LRHAFRARRFPEA 449
>05_05_0060 -
22015440-22015481,22015572-22015709,22016704-22016799,
22016911-22017135
Length = 166
Score = 30.3 bits (65), Expect = 1.2
Identities = 12/26 (46%), Positives = 17/26 (65%)
Frame = +1
Query: 91 AGQGGGSFSCSSDMPKRRRLQDLHHK 168
AG+GG +D+P+ RRL+DL K
Sbjct: 48 AGEGGAEADADADLPELRRLRDLEAK 73
>02_05_0146 -
26267245-26267339,26267427-26267469,26267589-26267725,
26268172-26268299,26268419-26268495,26268593-26268679,
26268817-26268933,26269115-26269165,26269383-26269497,
26270033-26270292
Length = 369
Score = 30.3 bits (65), Expect = 1.2
Identities = 19/47 (40%), Positives = 22/47 (46%)
Frame = -1
Query: 334 PTPWRRGPRAALSAAGAGWPPSPWCVSSNGPXPVDPLLARAGVGSSQ 194
P P RR A+ +AA G P P SS+ P P P A G G Q
Sbjct: 36 PLPARRWRVASSAAASGGSPDLPSSSSSSSPPPT-PAAASFGSGDEQ 81
>12_02_0528 + 20059613-20061472
Length = 619
Score = 29.1 bits (62), Expect = 2.8
Identities = 15/41 (36%), Positives = 19/41 (46%), Gaps = 5/41 (12%)
Frame = -1
Query: 307 AALSAAGAGWP-----PSPWCVSSNGPXPVDPLLARAGVGS 200
A L A WP P+PW + G P+ PL+ A GS
Sbjct: 25 AGLGELLAAWPSLADEPAPWYTPARGAEPLTPLMVAAVYGS 65
>09_04_0005 +
13612060-13612291,13612381-13612510,13612726-13612926,
13613086-13613185,13613513-13613559,13613871-13613964,
13614042-13614192,13614777-13614923,13614994-13615067,
13615288-13615376,13615840-13615954,13616104-13616301
Length = 525
Score = 29.1 bits (62), Expect = 2.8
Identities = 21/56 (37%), Positives = 26/56 (46%), Gaps = 8/56 (14%)
Frame = -1
Query: 355 SLVLLPWPTPW--RRGPRA------ALSAAGAGWPPSPWCVSSNGPXPVDPLLARA 212
+L+ LP P P+ PR A++A GA WPP V S P P P A A
Sbjct: 12 ALLPLPLPLPFCLPAAPRVRGRGGTAVAALGALWPPRLVAVESRPPPPSSPASASA 67
>06_03_0226 - 18420293-18420697
Length = 134
Score = 29.1 bits (62), Expect = 2.8
Identities = 12/15 (80%), Positives = 12/15 (80%)
Frame = -1
Query: 325 WRRGPRAALSAAGAG 281
WRRGPR A SAAG G
Sbjct: 51 WRRGPRPAQSAAGDG 65
>03_02_0982 +
12925861-12926211,12926309-12926378,12927190-12927287,
12927467-12927615,12928083-12928198,12928521-12928617,
12929122-12929206,12929303-12929365,12929505-12929645
Length = 389
Score = 28.7 bits (61), Expect = 3.7
Identities = 23/54 (42%), Positives = 25/54 (46%)
Frame = -1
Query: 319 RGPRAALSAAGAGWPPSPWCVSSNGPXPVDPLLARAGVGSSQLQHVAGRAVYGE 158
RGPR A SA A SPW S G P + +R VG S H G V GE
Sbjct: 23 RGPRPAASALVAPLLASPW-EPSGGGQPHWLVPSRGHVGHSH-HHHHGEEVGGE 74
>09_04_0508 + 18203079-18203900
Length = 273
Score = 28.3 bits (60), Expect = 4.9
Identities = 25/78 (32%), Positives = 34/78 (43%), Gaps = 1/78 (1%)
Frame = -1
Query: 397 RLYAAREGPRH*VRSLVLLPWPTPWRRGPRAALSAAGAGWPPS-PWCVSSNGPXPVDPLL 221
RL AA P H V L+L+ P GP AA + A PP+ ++ G L+
Sbjct: 5 RLAAAAAAP-HGVLLLLLILLPLVAAAGPAAAKAPAAPPAPPNVTTAMAKGGCKAFADLI 63
Query: 220 ARAGVGSSQLQHVAGRAV 167
A + SS Q AG +
Sbjct: 64 AASPDASSTYQSAAGGGI 81
>04_04_1295 + 32435392-32435480,32435593-32435698
Length = 64
Score = 28.3 bits (60), Expect = 4.9
Identities = 14/32 (43%), Positives = 15/32 (46%), Gaps = 4/32 (12%)
Frame = -1
Query: 340 PWPTPWRRGPRAALSAAGA----GWPPSPWCV 257
PW RRG R SAA A W PWC+
Sbjct: 29 PWTYMDRRGQRLETSAANADAPGAWVSMPWCL 60
>11_04_0423 - 17498569-17498932,17499217-17499992,17503439-17504617
Length = 772
Score = 27.9 bits (59), Expect = 6.5
Identities = 15/29 (51%), Positives = 17/29 (58%)
Frame = -1
Query: 352 LVLLPWPTPWRRGPRAALSAAGAGWPPSP 266
L LL PT PRAA +AA +PPSP
Sbjct: 453 LSLLSSPTSASPSPRAAAAAAPYPFPPSP 481
>07_03_1616 - 28167872-28168303
Length = 143
Score = 27.9 bits (59), Expect = 6.5
Identities = 19/49 (38%), Positives = 24/49 (48%), Gaps = 2/49 (4%)
Frame = -1
Query: 307 AALSAAGAGWPPSPWCVSSNGPXPVDPLLAR--AGVGSSQLQHVAGRAV 167
AAL+ +GA P SS P P PLLAR + SS+L R +
Sbjct: 29 AALAGSGALLPRLDGVPSSPSPSPAPPLLARSFSATSSSRLPREFSRTL 77
>04_04_0825 +
28443961-28444099,28444527-28444603,28444710-28444758,
28445283-28445367,28445506-28445755,28447053-28447373
Length = 306
Score = 27.9 bits (59), Expect = 6.5
Identities = 14/48 (29%), Positives = 28/48 (58%), Gaps = 2/48 (4%)
Frame = -2
Query: 201 ALSFNMSPDAQFMVKVLESSSLGH--ITAAAK*ASPLAGCPGCIVSPG 64
+LS ++ PD + M + S S ++++++ S +G GC+V+PG
Sbjct: 247 SLSLSLGPDPKCMPAIASSPSESSCILSSSSRSFSDCSGNSGCLVAPG 294
>03_05_0843 +
28126480-28127007,28127092-28127457,28129388-28129487,
28130266-28130546,28130643-28130705,28131276-28131431,
28131913-28132080,28132158-28132298,28132714-28132840,
28132888-28132994,28134142-28134372,28134446-28134559,
28135091-28135261
Length = 850
Score = 27.9 bits (59), Expect = 6.5
Identities = 14/32 (43%), Positives = 17/32 (53%)
Frame = +2
Query: 8 RWFAVDPETGVLSYYLYDGPGDTIQPGQPARG 103
RWFA+ GVLSYY GP + + RG
Sbjct: 106 RWFAL--HDGVLSYYKIHGPDRIVLSRETERG 135
>12_01_0737 - 6588612-6588922,6595261-6596602,6596639-6596749
Length = 587
Score = 27.5 bits (58), Expect = 8.6
Identities = 21/56 (37%), Positives = 24/56 (42%), Gaps = 3/56 (5%)
Frame = -1
Query: 331 TPWRRGPR---AALSAAGAGWPPSPWCVSSNGPXPVDPLLARAGVGSSQLQHVAGR 173
TPWR R A S AG G P + NGP VDP A ++ V GR
Sbjct: 488 TPWRLRARLSHARPSPAGRGL--LPLAMRGNGPTHVDPAEATVADKVGLVEAVCGR 541
>10_08_0245 +
16138402-16138548,16138648-16138701,16139106-16139171,
16139427-16139483,16140490-16140610,16140704-16140744,
16140835-16140886,16141555-16141623,16141697-16141768,
16141890-16142045,16143067-16143284,16143359-16143398,
16143484-16143602,16143726-16143827,16144256-16144300,
16144890-16145030,16145172-16145267,16145415-16145516,
16145611-16145709
Length = 598
Score = 27.5 bits (58), Expect = 8.6
Identities = 13/43 (30%), Positives = 23/43 (53%)
Frame = -1
Query: 250 NGPXPVDPLLARAGVGSSQLQHVAGRAVYGEGLGVFVAWAYHC 122
+G + PL +R G +Q+QH+ + G G+G ++ HC
Sbjct: 227 SGGFNISPLKSRNGRIRTQVQHLMQIDLKGWGVGYLPSFQQHC 269
>07_03_0543 +
19272389-19272534,19273337-19273496,19273584-19273741,
19273852-19273945,19274082-19274198,19275119-19275229,
19275309-19275396,19275615-19275718,19275796-19275867,
19275950-19276039,19276151-19276308,19276746-19276752,
19277140-19277194,19277273-19277421,19277543-19277664,
19277916-19278105
Length = 606
Score = 27.5 bits (58), Expect = 8.6
Identities = 15/34 (44%), Positives = 19/34 (55%), Gaps = 3/34 (8%)
Frame = -1
Query: 313 PRAALSAAGAGWP---PSPWCVSSNGPXPVDPLL 221
P AA +AA A P PSP + P P+DP+L
Sbjct: 12 PEAAAAAAAASSPLRRPSPRVLREVPPPPLDPIL 45
>04_04_0999 - 30002433-30003279,30003384-30003513,30003620-30003758
Length = 371
Score = 27.5 bits (58), Expect = 8.6
Identities = 12/34 (35%), Positives = 18/34 (52%)
Frame = +2
Query: 134 PSDEDSKTFTINCASGDMLKLRATDARARQEWVD 235
PS S T T NC+SGD ++ ++ +E D
Sbjct: 143 PSPSSSTTTTTNCSSGDSAGEQSNTSKEEEEETD 176
>04_04_0169 +
23266110-23266439,23267208-23267288,23267399-23267538,
23267815-23268070
Length = 268
Score = 27.5 bits (58), Expect = 8.6
Identities = 17/31 (54%), Positives = 18/31 (58%), Gaps = 3/31 (9%)
Frame = -2
Query: 303 LSRLQG--RVGPHHLGVYPAMA-LXPSTHSW 220
LSRL G R GPHH VY A A L P S+
Sbjct: 18 LSRLAGAARFGPHHCAVYAANAFLGPDLGSF 48
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,195,782
Number of Sequences: 37544
Number of extensions: 349703
Number of successful extensions: 1499
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 1447
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1494
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1423789920
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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